Bioinformatician@UCSF, Free Software enthusiast
San Francisco
Joined February 2020
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"Biology" is still banned in Fable @claudeai , so there is only one thing to do: build an @F1 and @MotoGP championship tracker cpp.aozalevsky.workers.dev/
not a one-shot but still impressive.
Arthur Zalevsky retweeted
I received a U.S. visa refusal under Section 214(b) and was found ineligible. Prior to that, I had been waiting for more than 10 months during the administrative processing, with no clear deadlines or updates.
gotta love ai agents:
Full eval works perfectly (0.002Å final RMSD, faster than original 23.8s → 35.2s... wait that's slower)
Everyone deserves a fair assessment - even integrative structure models in the PDB. The IHMValidation pipeline is finally out doi.org/10.1016/j.jmb.2025.1…. So go and check a validation report for your favorite integrative model. Or do better and deposit one!
Arthur Zalevsky retweeted
In our latest preprint on bioRxiv, we present the in situ structure of the human gap junction at 14 Å resolution using cryo-ET.
The structure provides a blueprint for investigating how connexin regulation shapes intercellular communication in health and disease.
It's starting to look like a funeral procession. First, CASP, then MLSB, and now the CCL is going away:
"""
With some melancholic feelings I need to announce that I will be closing the CCL Mailing list <...> It will happen within a week or two.<...>
Jan Labanowski
"""
The CCL has been an important community forum/resource for the computational chemistry and biology communities for the past 35 years.
en.wikipedia.org/wiki/Comput…
Arthur Zalevsky retweeted
Please RT!
I have 2 postdoctoral positions in my lab @BRFAA_IIBEAA to work on MD sims for protein allostery, cryptic pocket identification, CADD/FEP. Knowledge in coarse-grained MD is a plus.
More info: linkedin.com/hiring/jobs/424….
Send me an email with your CV if interested!
Arthur Zalevsky retweeted
In the Bay Area? Love computational cryo-EM/ET?
Come join us for the first edition of FrostByte - a meeting for the local computational cryo-EM methods community!
Details and registration at frostbyte-cryoem.github.io
Thanks to @JoshDcryoEM & Ariana Peck for help organizing!
Does anyone know how to set up @AdblockPlus for LLMs? Apparently, @OpenAI now inserts random ads in the DeepResearcher output. @LisenMartin , how could I not follow you after this?
Want to learn how to deposit your integrative structures to the PDB? Join us on April 7th at 13:00 EST for a virtual office hour, during which Brinda and Monica will guide you through the full process!
rcsb.org/news/feature/67b780…
Arthur Zalevsky retweeted
Our work with Jan Ellenberg's group has been published in PNAS. We developed a new, integrative method to study biomolecular dynamics and applied it to study the assembly mechanism of the nuclear pore complex pnas.org/doi/10.1073/pnas.24…
wow, that's a pretty drastic change.
Last year, $9B of the $35B that the National Institutes of Health (NIH) granted for research was used for administrative overhead, what is known as “indirect costs.” Today, NIH lowered the maximum indirect cost rate research institutions can charge the government to 15%, above what many major foundations allow and much lower than the 60%+ that some institutions charge the government today. This change will save more than $4B a year effective immediately.
Arthur Zalevsky retweeted
Super excited to preprint our work on developing a Biomolecular Emulator (BioEmu): Scalable emulation of protein equilibrium ensembles with generative deep learning from @MSFTResearch AI for Science.
#ML #AI #NeuralNetworks #Biology #AI4Science
biorxiv.org/content/10.1101/…
Arthur Zalevsky retweeted
Do you want to work at the interface of molecular simulations, structural biology experiments and #AI? Come to Paris for a PhD at @institutpasteur. 1 PhD position is available in our lab funded by @ERC_Research. Please repost!! #compchem #compbio Info 👇 research.pasteur.fr/b/15Hr