@BioCgpapado

PostDoc in computational genomics and evolution

 Barcelona, Spain
Joined March 2023
  • Tweets9
  • Following47
  • Followers39
Chris Papadopoulos retweeted
Anne Lopes@anne__lopes30 Oct 2024
very happy to present our latest work on the diversity of RiboSeq signals associated with canonical and noncanonical translation! An almost 100% @i2bc paper with @BioCgpapado and @namyolivier published in @GenomeBiology ! genomebiology.biomedcentral.…

The ribosome profiling landscape of yeast reveals a high diversity in pervasive translation

Genome Biology - Pervasive translation is a widespread phenomenon that plays a critical role in the emergence of novel microproteins, but the diversity of translation patterns contributing to their...

link.springer.com
4
7
1
24
1,735
Chris Papadopoulos retweeted
Anne Lopes@anne__lopes17 Oct 2024
DENSE is out! Mine your genome and highlight its de novo genes :D
I2BC Paris-Saclay@I2BCParisSaclay17 Oct 2024
De Novo Emerged Gene Search in Eukaryotes with DENSE | @scoopit sco.lt/8RJ9yS @anne__lopes @GenomeBiolEvol #denovogenes

De Novo Emerged Gene Search in Eukaryotes with DENSE | I2BC Paris-Saclay

DENSE with your favorite genome and uncover its de novo genes! Try our fully automated tool for DE Novo gene SEarch and discover useful metrics to help design your search! The recent discovery of de...

scoop.it
1
19
95
12,050
Very excited about our recent work with ⁦@anne__lopes⁩ exploring the ribosome profiling landscape of yeast and detecting pervasively translated ORFs! Published in ⁦@GenomeBiology⁩! 🧬 genomebiology.biomedcentral.…

The ribosome profiling landscape of yeast reveals a high diversity in pervasive translation

Genome Biology - Pervasive translation is a widespread phenomenon that plays a critical role in the emergence of novel microproteins, but the diversity of translation patterns contributing to their...

link.springer.com
2
8
24
2,122
Chris Papadopoulos retweeted
Marta Espinosa@martaecamarena11 Jul 2024
Our work on liver cancer microproteins as targets for cancer vaccines is out at @ScienceAdvances !!! A 🧵 with the main findings: science.org/doi/10.1126/scia…

Microproteins encoded by noncanonical ORFs are a major source of tumor-specific antigens in a liver...

A set of uncharacterized small proteins expressed only in tumors could be exploited to develop anticancer vaccines.

science.org
4
16
3
86
12,393
Detect your TRGs and know if they potentially evolved de novo with this new tool!!! Good job @anne__lopes
Anne Lopes@anne__lopes5 Feb 2024
DENSE with your favorite genome and uncover its de novo genes! Here we introduce our latest tool for DE Novo gene SEarch along with useful metrics to help you design your search! biorxiv.org/content/10.1101/…

DE Novo emerged gene SEarch in Eukaryotes with DENSE

The discovery of de novo emerged genes, originating from previously noncoding DNA regions, challenges traditional views of species evolution. Indeed, the hypothesis of neutrally evolving sequences...

biorxiv.org
7
446
Chris Papadopoulos retweeted
Anne Lopes@anne__lopes5 Feb 2024
DENSE with your favorite genome and uncover its de novo genes! Here we introduce our latest tool for DE Novo gene SEarch along with useful metrics to help you design your search! biorxiv.org/content/10.1101/…

DE Novo emerged gene SEarch in Eukaryotes with DENSE

The discovery of de novo emerged genes, originating from previously noncoding DNA regions, challenges traditional views of species evolution. Indeed, the hypothesis of neutrally evolving sequences...

biorxiv.org
1
13
2
36
4,642
Happy to present our first results on novel transcripts at the yeast population! Special thanks to the organizers of the SMBE satellite meeting on de novo gene birth. @maralbasoler – at College Station, TX
2
13
418
📰On the 31st of May, @BioCgpapado @martaecamarena & @jcarlosmond, part of Mar Albà's Team, attend the second #microproteins2023 in Denmark! Our director of @GRIB_Barcelona, @maralbasoler was one of the organizers of the event👩‍💻 @HMar_research @the_prbb
6
14
579
Chris Papadopoulos retweeted
Marta Espinosa@martaecamarena2 Jun 2023
Really thankful for these two very intense days of science at an incredible place with amazing people. I come back home plenty of new ideas #microproteins2023
3
12
464
Load more