@BioContainers

A community-driven project to create and manage bioinformatics software containers

 Cambridge, England
BioContainers.pro
Joined August 2015
  • Tweets354
  • Following41
  • Followers866
8Media
Include

Only show posts containing:

Exclude

Hide posts containing:

Time range
-
Minimum likes
Replying to @idvb87
We fixed the error, should be working now
17
Exciting news! #SAGE is now integrated into quantms.org, thanks to the amazing @OpenMSTeam and @michaellazear. Joining COMET (The STABLE) and MSGF (the Deeper), SAGE brings its speed, efficiency, and youthful vibe to #quantms. Let's celebrate at #HUPO2023! 🎉
3
5
23
3,786
✨ In 2022, there is a total of 496 services within #ELIXIR. Including: #LSLogin #ELIXIRAAI @FAIRsharing_org #ELIXIRTeSS @BioContainers #BioTools 👀 Find out more in our 2022 annual report: elixir-europe.org/sites/defa…
1
7
13
970
#quantms is now a #preprint. quantms: A cloud-based pipeline for #proteomics reanalysis enables the quantification of 17521 proteins in 9,502 human samples. researchsquare.com/article/r… Thanks to @OpenMSTeam @DemichevLab, @nf_core, @BioContainers, #BioConda and @nextflowio team’s. 🧵

quantms: A cloud-based pipeline for proteomics reanalysis enables the quantification of 17521...

Public proteomics data is rapidly increasing, creating a computational challenge for large-scale reanalysis. Here, we introduce quantms, an open-source cloud-based pipeline for massively parallel...

researchsquare.com
2
8
29
3,214
BioContainers retweeted
Evan Floden
@EvanFloden25 May 2023
Very excited to partner with Genomics England on this one.
This quoted post is unavailable.
Try viewing anyway · View on X
1
9
524
BioContainers retweeted
Phil Ewels@tallphil6 May 2023
Had a lot of fun doing this - a nice beginner friendly tutorial 😊 Take your #Python analysis script and build it into a command-line tool, ready for release via @pypi / #bioconda / @BioContainers 🐍🐳🎉 Watch now on YouTube: youtube.com/watch?v=hOuS6mXC…

nf-core/bytesize: Converting Python scripts into packages for PyPI, Bioconda & Biocontainers

Phil Ewels shows you how to take a Python script and turn it into a...

youtube.com
nf-core@nf_core2 May 2023
Hej, todays @nf_core #bytesize talk about python script packaging with Phil Ewels will start in 8 minutes, 1pm CEST. Find the zoom link here: nf-co.re/events/2023/bytesiz…

Bytesize: Converting Python scripts into packages for PyPI, Bioconda & Biocontainers

Phil Ewels - Seqera Labs

nf-co.re
3
20
2,143
BioContainers retweeted
V@vsoch24 Apr 2023
Our paper "Automated Discovery of Container Executables" is published in the Journal of Open Research Software! 👉 doi.org/10.5334/jors.451. This was fun work with @MarcoDeLa83 and Audrey Stott from @PawseyCentre , @mathgeorgia, and Matthieu Muffato of @sangerinstitute.
1
3
10
1,086
BioContainers retweeted
V@vsoch24 Apr 2023
We created automated pipelines that would not only discover new @BioContainers to add to our online registry, but also executables of interest inside! Our journey included new software, databases, and automation to help developers maintain their own registries. Each of these...
1
1
2
179
Load more