The Childhood Cancer Data Lab, founded by @alexslemonade, is at the intersection of big data and childhood cancer research. Read our blog: https://xitter.cf/t.co/7GRvCQQrOn
Philadelphia area & worldwide
Joined June 2017
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We had a great time being part of #AACR26 — sharing resources like our Single-cell Pediatric Cancer Atlas Portal, meeting @AlexsLemonade grant recipients, and learning about the latest advancements in cancer research.
Learn more about the Data Lab: ccdatalab.org
Meet the Data Lab at #AACR26! 🎉
Stop by Booth 2918 to meet our team and explore resources to accelerate new treatment and cure discovery for pediatric cancer.
Are you attending #ENAR2026 in Indianapolis next week? Don’t miss the Data Lab’s presentation on machine learning in pediatric cancer research, presented by our director Dr. Jaclyn N. Taroni, on March 16!
#MachineLearning #PediatricCancer
Did you know the Data Lab can support your data-intensive research projects? Our science team specializes in working with large datasets from designing pipelines to ensuring reproducible analysis.
Learn more! ccdatalab.org/scientific-col…
📊 Access rich datasets that include data, metadata, and expertly curated cell type annotations…for free!
ALT An example of downloading a project from the ScPCA Portal.
🔍 User-friendly search and filter tools allow you to quickly find the projects you’re interested in.
ALT A project page on the ScPCA Portal.
🔬 Explore over 700 samples from 55 pediatric cancer types, all in one place.
ALT The homepage of the Single-cell Pediatric Cancer Atlas (ScPCA) Portal.
Connect with our team at the #AACR Special Conference: Discovery and Innovation in #PediatricCancer! Dr. Ally Hawkins will be presenting our work on a collaboration aimed at uncovering therapeutic vulnerabilities in #EwingSarcoma.
🗓️ Tonight (9/25) | 7-9:30PM
📍 Poster Session A
Several projects on the Portal contain bulk RNA-seq data in addition to single-cell/nuclei RNA-seq data. We compared modalities across five solid tumor projects to explore potential biological differences.
ALT Figure 6 from the ScPCA preprint: Comparison of bulk and pseudo-bulk modalities.
Using an ontology-based approach, we have assigned consensus cell types to all samples on the ScPCA Portal. They are now included in all processed and merged datasets from the Portal!
ALT Figure 5 from the ScPCA preprint: Consensus cell type annotations in Brain and CNS tumors.
Thank you to everyone who joined us to learn advanced topics in #SingleCell #RNAseq analysis this week. We look forward to hosting more researchers at our workshops this year.
The Data Lab is exploring new topics to expand our training program! We invite #PediatricCancer researchers to take a 10-min survey that will help shape future learning opportunities for the community.
🚀 Take our survey! forms.gle/J9YztY4r5BQ1ch66A
The ALSF Data Lab and Grants teams are at #AACR25! Interested in learning how we can support your #PediatricCancer research? Connect with us at booth 3706.
Hear from Drs. Eric Wafula and Elena Vasileva who sat down with us to share their experiences at Data Lab training workshops! Learn why they believe our #SingleCell #RNASeq courses are essential for #PediatricCancer researchers.
youtu.be/59-BU59Nk_M?si=M67U…
The complete Ewing sarcoma module is available for anyone to explore here! github.com/AlexsLemonade/Ope…
Explore the full grants table, learn about eligibility requirements, and get started here: github.com/AlexsLemonade/Ope…
We’re looking forward to hosting more hands-on training workshops in 2025! Are you on the list to be notified about future workshop opportunities?
Visit ccdatalab.org/data-science-w… to learn about our training program, browse the workshop materials, and join our mailing list!
