Building a comprehensive, standardized knowledge repository of SARS-CoV-2 virus-host interaction mechanisms, guided by domain experts, based on published work.

Joined May 2020
The COVID-19 Disease Map (doi.org/10.17881/covid19-dis…), is an effort to build a comprehensive, standardized knowledge repository of SARS-CoV-2 virus-host interaction mechanisms, guided by input from domain experts and based on published work. #covidpathways.
COVID-19 Pathways retweeted
new: "Tissue-specific pathway activities: A retrospective analysis in COVID-19 patients" doi.org/10.3389/fimmu.2022.9… #COVID19 #SARSCov2
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COVID-19 Pathways retweeted
Nhung Pham is presenting our work on tissue-specific pathway activity in COVID-19 patients today at the 6th Disease Map Community Meeting @WikiPathways @CovidPathways #DMCM2021 disease-maps.org/DMCM2021
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new: "COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms" embopress.org/doi/full/10.15…
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COVID-19 Pathways retweeted
Our paper describing the benefits of applying the #AdverseOutcomePathway framework to #COVID19 is now finally peer-reviewed and accepted for publication in #FrontiersinPublicHealth! frontiersin.org/articles/10.…
Due to a surprisingly slow peer-review process in combo with a field that doesn't age well we decided to publish a preprint of our first #CIAO paper describing the concept of applying the #AdverseOutcomePathway framework to #COVID19 Keep your eye on @CiaoCovid for more to come!
including the #COVID19 track discussed in our weekly telcons: biocreative.bioinformatics.u…
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COVID-19 Pathways retweeted
There are 270 new #PDB entries this week, including these 22 variant structures of the spike protein from #SARSCoV2, including B.1.1.7 (UK), B.1.351 (SA) & B.1.1.28 (Brazil) variants, solved by @sophie_gobeil, @priyam2021 et al. View all new entries at PDBe.org/latest
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COVID-19 Pathways retweeted
A Resource for the Network Representation of Cell Perturbations Caused by SARS-CoV-2 Infection: signor.uniroma2.it/covid/ via @Genes_MDPI @signor_database @CovidPathways @elixir_it @BiologiaUniRM2 #ELIXIRvsCOVID19 #mdpigenes mdpi.com/2073-4425/12/3/450
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our project benefits from and contributes to the work of the EBI open data platforms. If you have not done so already, consider filling out their survey
Dear #lifescience community, we need your 🧠 If you use #opendata, please fill in our impact survey to help us understand the value of open data resources, and to keep the data flowing. surveymonkey.co.uk/r/EMBL-EB… #valueopendata #openscience #FAIRdata #openaccess
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maybe members from our community can coin in too? Are the PANGO lineage codes useful in our project? Please leave your comment on the Wikidata page linked below.
New COVID-19 - related proposal on @wikidata: @arambaut 's PANGO lineage code (cov-lineages.org) wikidata.org/wiki/Wikidata:P… Which other properties related to SARS-CoV-2 strains you would like to see on Wikidata next?
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COVID-19 Pathways retweeted
we had a @WikiPathways @CovidPathways curathon event and with quite a few pathway updates (see screenshot) and three new @wikidata items too :) Updated curation reports: wikipathways.github.io/SARS-…
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HT/@nightrose I just stumbled upon the Wikidata Entity Explosion extension for Chrome and Firefox. This is really awesome! Once installed the extension will list metadata from #wikidata for a given site. Tested on #inaturalist and #wikipathways. awesome! wikidata.org/wiki/Wikidata:E…
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COVID-19 Pathways retweeted
revised preprint "COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms" now online: biorxiv.org/content/10.1101/…
revised preprint "COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms" now online: biorxiv.org/content/10.1101/…
COVID-19 Pathways retweeted
Webinar on "Vitamin D, Immunity and Covid-19" by @MartinHewison, February 24 organised by NuGO, @CovidPathways and @ELIXIREurope's Food and Nutrition Community: nugo.org/courses-and-trainin…
I am proud to share our latest paper on "A protocol for adding knowledge to #Wikidata: aligning resources on human coronaviruses" is online. doi.org/10.1186/s12915-020-0…
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COVID-19 Pathways retweeted
Interleukin-6 Receptor Antagonists tocilizumab and sarilumab, normally used arthritis, in Critically Ill Patients with Covid-19 - Preliminary report medrxiv.org/content/10.1101/… Finds better outcome including survival
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Young children account for only a small percentage of COVID-19 infections, a trend that has puzzled scientists. A growing body of evidence suggests why: kids’ immune systems seem better equipped to eliminate SARS-CoV-2 than are adults’. go.nature.com/3me7E8h
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COVID-19 Pathways retweeted
In todays @MaastrichtU data science seminar (in 40 minutes) I will introduce the @CovidPathways COVID-19 Disease Maps project and @bigcat_UM postdoc Nhung Pham will talk about the @WikiPathways specific efforts in our @NWO_Science project maastrichtuniversity.nl/even…
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