Official account for Garmire Lab. https://xitter.cf/t.co/RLI15iyle4
Ann Arbor
Joined June 2021
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This is the official Twitter account for Garmire Lab. We will share our works in the account.
New preprint "HOMED enables hierarchical and multimodal optimization of DNA methylation deconvolution across tissues": biorxiv.org/content/10.64898… HOMED deconvolutes complex tissues such as placenta, with the aid of single-cell data, solving the critical heterogeneity issue in EWAS.
Garmire Lab retweeted
Havent been very active on X, but my PhD student Yuheng Du passed her PhD thesis defense this week! #proudPI #mentorship
Congratulations to Dr. Tay for successfully defending his PhD on March 27th! 🎓Tay has been working on drug repurposing and women's health with dissertation titled: Precision Medicine with Single-Cell and Spatial Transcriptomics: Applications to Preeclampsia
@GarmireGroup
Another new paper from our group: "Investigate the Effects of Preeclampsia Severity, Race and Fetal Sex on Subsequent Maternal Complications Using EHR Data From Over 100,000 Pregnancies" with cross-insitutional validation @CedarsSinai @VUMChealth Link: onlinelibrary.wiley.com/doi/…
Congratulations to Xiaotong for the GigaScience paper "Cord blood DNA methylation and cell type composition are not significantly associated with severe preeclampsia, after cell type and clinical covariate adjustment". Link: pubmed.ncbi.nlm.nih.gov/4154…
The #multiomics and #multiethnic analysis on the impact of maternal #obesity and #cancer risk prediction is officially published on @GigaScience. Check of the paper here: doi.org/10.1093/gigascience/… @GarmireGroup
Garmire Lab retweeted
😍🥳🤩Our work starting *10 years* ago on #maternal #obesity impact over #multiomics of cord blood in #offspring finally got published today on @GigaScience! I was a fresh new faculty of @UHCancerCenter then! A thread. 1/n
doi.org/10.1093/gigascience/…
Garmire Lab retweeted
Just published!
Our latest review in "Seminars in Nephrology" summarizing recent advancements, key challenges, and potential solutions in #omics data integration in #nephrology, supporting the goals of #PrecisionMedicine.
Co-authored with Yuheng Du, PhD student at the lab of the great Dr. @GarmireGroup at the @UMich and in collaboration with the talented Tianqing Feng, computational scientist at the Center for Precision Medicine @UTHealthSA!
Grateful for the opportunity to learn from Dr. Garmire, awardee of US Presidential Early Career Scientists and Engineers in 2019!
#MultiOmics #Nephrology #PrecisionMedicine #BiomedicalResearch #GarmireLab #CenterForPrecisionMedicine
Center for precision of Medicine: wp.uthscsa.edu/cpm/
@GarmireLab : garmiregroup.org
@UTHealthSA @UTHSAResearch @UTHealthSAlumni
@UTHealthSA_UP @UTHealthSA_OPA @IIMSCTSA @utsystem @UTHealthSANeph
Take a look 👇👇
Multi-Omics Integration in Nephrology: Advances, Challenges, and Future Directions - Seminars in Nephrology seminarsinnephrology.org/art…
A huge congratulation goes to Xiaotong Yang, who has been awarded the @umichgradschool 2025 Rackham Predoctoral Fellowship!🎉 🥳👏
Congratulations to Yuheng and all co-authors! 🎉The multi-ethnic and multi-omics study on the effect of maternal obesity including the Native Hawaiian population has been accepted in principle for publication in GigaScience. Link to preprint: medrxiv.org/content/10.1101/…
Congratulations to Tay and all co-authors! Originator has been officially accepted for publication in Genome Biology. 🎉"Originator, a computational tool separating single-cell RNA-seq by genetic and contextual information".
New preprint from Garmire's Lab (under review at Genome Biology): Originator, a novel tool that deciphers single cells by genetic origin and separates immune cells of blood contamination from those of expected tissue-resident cells. Link: biorxiv.org/content/10.1101/…
Updated preprint (under review at GigaScience): Leveraging a maternal obesity model for the independent prediction of cancer status in TCGA samples. Explore the intersection of maternal health and cancer biology: medrxiv.org/content/10.1101/…
New pre-print from our group on a unique Native Hawaiian and Pacific Islander (NHPI) cohort examining the impact of maternal pre-pregnancy obesity with multiome: medrxiv.org/content/10.1101/… #Obesity #MaternalHealth #Epigenetics #Multiomics
New preprint from Garmire's Lab (under review at Genome Biology): Originator, a novel tool that deciphers single cells by genetic origin and separates immune cells of blood contamination from those of expected tissue-resident cells. Link: biorxiv.org/content/10.1101/…
New revised preprint from Garmire's Lab: Discover overlooked complications after #preeclampsia from three real-world medical record datasets of over 100,000 pregnancies doi.org/10.1101/2023.12.05.2… Utilizing large-scale #EHR data from @umichmedicine @CedarsSinai and UKBiobank
Congratulations to Yijun on reaching such a significant milestone!🎉🥳
Belated congratulations to @jenny589446011 who was co-advised by me and Dr. Jian Kang in @umichsph biostat. She graduated with PhD and now is a postdoc with @rafalab. 🤩❤️
Garmire Lab retweeted
Belated congratulations to @jenny589446011 who was co-advised by me and Dr. Jian Kang in @umichsph biostat. She graduated with PhD and now is a postdoc with @rafalab. 🤩❤️
New pre-print from our group on a unique Native Hawaiian and Pacific Islander (NHPI) cohort examining the impact of maternal pre-pregnancy obesity with multiome: medrxiv.org/content/10.1101/… #Obesity #MaternalHealth #Epigenetics #Multiomics
Recent lab outing to celebrate the start of a new school year 🔭🧪🔬🧬 Excited to welcome visiting students from HUST and USTC, along with our new Master’s, PhD students, and RAs this semester! #Bioinformatics #worklifebalance
Garmire Lab retweeted
@HaileyBallard20 @dominicklemas and @GarmireLab exploring the utilities of electronic health record data to predict #preeclampsia diagnosis time, using @UMich precision health data and validated by @UFHealth data, is accepted by @jmirpub.
medrxiv.org/content/medrxiv/…
New preprint from our group: biorxiv.org/content/10.1101/… "Originator" helps decipher single cells by genetic origin and separates blood cells from tissue-resident cells.
Worried about #blood #contamination in your single cell RNA-Seq data? Want to exam the difference in blood vs tissue immune cells? Want to check the #genetic background differences among cells?
Check out our Originator.
#singlecell #TME #immuneSystem
biorxiv.org/content/10.1101/…