Greene Lab @ the Department of Systems Pharmacology at @PennMedicine. News account used for Greene Lab website. You might prefer to follow @greenescientist
Philadelphia, PA
Joined November 2012
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“Manubot is a series of software packages, as well as some of the glue to tie them together, that lets you turn a GitHub repository into a self-published manuscript.”
natureindex.com/news-blog/th…
Prodigious #SVG tutorial created by our frontend developer @VinceRubinetti. Learn how to code SVGs by hand with 6 practice exercises. greenelab.github.io/intro-to…
Greene Laboratory retweeted
Our paper "Open collaborative writing with Manubot" is now available at @PLOSCompBiol. #Manubot uses Markdown + GitHub for continuous publication. doi.org/10.1371/journal.pcbi… 1/8
Greene Laboratory retweeted
Videos from #FORCE2018 now online. 🎥
See my talk on #Manubot at youtu.be/sGL0osdby0U?list=PL… (playlist links to other talks).
Thanks @force11rescomm for the great recording & releasing it under a @creativecommons license… wish all conferences did this!
Interested in making webapps to help research diseases & make science more accessible, transparent & reproducible?
The @GreeneLab is hiring a frontend software engineer in #Philly.
Job includes #uiux, #reactjs #webdev #css #js #git #opensource
jobs.hr.upenn.edu/postings/3…
Projects include:
• Manubot: a system for writing scholarly manuscripts on GitHub greenelab.github.io/manufund…
• Adage: neural network based gene set analyses adage.greenelab.com
• Tribe: crowdsourced gene collections tribe.greenelab.com
Where big data & biology meet!
Greene Laboratory retweeted
Manubot v0.2.0 now released at pypi.org/project/manubot/0.2… including the `manubot cite` command-line utility. Easily generate CSL metadata and references for 1000s of bibliographic styles from standard citation identifiers, such as doi:10.1038/nbt.3780; pmid:29424689; arxiv:1407.3561
Greene Laboratory retweeted
"Revolutionizing scholarly writing with the Manubot: a foreshadow of publishing's future" by @dhimmel.
Come see this and other amazing talks at #FORCE18 this October in Montreal! buff.ly/2ILp359
Yesterday we celebrated with @nanditagarud who will be joining @uclaeeb as a new faculty in 2019!
We are so excited for you Nandita!
Greene Laboratory retweeted
#GI2018 @GreeneScientist shows that PLIER can be applied to many datasets and you can use the latent vars to ID function across OTHER datasets. bit.ly/MultiPLIER I think this is the PLIER package: github.com/wgmao/PLIER
Greene Laboratory retweeted
Casey’s lab develops methods to analyze big biological data and makes these tools/data accessible for the rest of us. If you want a brilliant and inspiring postdoc mentor with a refreshing irreverence for the status quo, look no further! xitter.cf/greenescientist/status…
Greene Laboratory retweeted
The accepted manuscript of the @Sci_Hub Coverage Study published in @eLife (typeset version in the next few weeks) doi.org/10.7554/eLife.32822
Thanks @arielswn, Levernier, Munro, @SteveMcLaugh, @gedankenstuecke, and @GreeneScientist for your contributions!
Greene Laboratory retweeted
One takeaway is that everyone was so helpful and constructive when reviewing new text. Working toward a common goal made it very different from typical manuscript review.
Greene Laboratory retweeted
In a rebuke to the closed world of scientific research, volunteer coders help @Penn take on cancer! By @roxanneshep thephiladelphiacitizen.org/c…
Greene Laboratory retweeted
#Cognoma Launch Party tonight at @MilkBoyPhilly. Details at meetu.ps/3dzlvc. Get ready for the celebration and historic raffle! xitter.cf/verypickyeater/status/…
Getting ready for tomorrow! @ProjectCognoma #cancerwecominforyou #cancer #data #technology #philly #phillytech #developers #Penn #ALSF
Greene Laboratory retweeted
The #Cognoma Launch Party 🎉 will be 6–9PM Wednesday, October 11, 2017
at @MilkBoyPhilly. Hope to see you there! meetu.ps/3dzlvc
Greene Laboratory retweeted
Manubot's use of Continuous Integration mentioned in @NatureNews at doi.org/cdvr. Manubot uses CI for continuous publication!
Greene Laboratory retweeted
Research parasites wanted. Q&A w/ @GreeneScientist & @thebyrdlab on the #researchparasite & #researchsymbiont awards gigasciencejournal.com/blog/… – at Hong Kong
Greene Laboratory retweeted
I just wrote my first ever blog post! It's about the Data Refinery, a project I've been working on for a while:
ccdatalab.org/blog/data-refi…
Greene Laboratory retweeted
New blog post from @datawheeler about the #DataRefinery we're building!
ccdatalab.org/blog/data-refi…