@ISCB_RegSys

The ISCB Regulatory and Systems Genomics Community of Special Interest (RegSys COSI) focuses on computational methods for studying gene/systems regulation

cosi.iscb.org/wiki/RegSIG:Home
Joined June 2019
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  • Following267
  • Followers562
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Join us at 11.10am @ISCB_RegSys in room Rhone 2 for a talk by Vipin Kumar from my group, who will present his work on integrating HiC with CAGE to identify 3D-enriched transcriptional events. #RegSys #ISMBECCB2023
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#ismbeccb2023 in Lyon is bigger than ever! Looking forward to talks and posters in @ISCB_RegSys COSI starting today. I present a poster (B-337) about computational analysis of transcription factor motifs produced in #JussiTaipale Lab. @HelsinkiUniMed @CoEinTG
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Are you at #ISMBECCB2023? Wanna hear about designing cell type specific enhancers guided by deep learning models? Visit my poster today (B-346) and my talk tomorrow (17h20) at @ISCB_RegSys COSI!
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Replying to @TeifLab
RegSys COSI at ISMB/ECCB2023 happening in Lyon @ISCB_RegSys iscb.org/ismbeccb2023
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Couldn't be happier to debut on Twitter with this exciting news! Thanks @ISCB_RegSys for letting me share my work and my lab @uwe_ohler for their support! Big shout-out to the organizers, my fellow speakers, and participants for making the #ISMB2022 #RegSys track truly inspiring.
ISCB RegSys@ISCB_RegSys15 Jul 2022
We had several outstanding talks at #ISMB2022 #RegSys this year and it was very difficult to pick a best talk. Our committee has decided to split the RegSys Best Talk award two ways between Pia Rautenstrauch and Anusri Pampari. Congratulations to both!
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Replying to @ina_deutschmann @ISCB_RegSys @JulioSaezRod @satijalab @MingboCheng
Day 2 @ISCB_RegSys #ISMB2022 3⃣outstanding keynotes @sroyyors+@FurlanLab+@ZhipingWeng 9⃣great talks #Chromatin #MotifDiscovery #TranscriptionFactor #BindingSites #RegulatoryElements #scHiC #3DGenome #MatrixFactorization #SingleCell #DeepLearning Wonderful COSI - Thank you! :)
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For some reason I've been thinking about the sword of Damocles all day .. @ISCB_RegSys
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Replying to @sroyyors
@sroyyors 's @ISCB_RegSys Keynote on Cell type specific Regulatory networks was amazing! If you missed it you can see the recorded version in the Juno app! If you are looking for a place to do a PhD or postdoc this is a great one 🤓 #ISMB2022
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ISCB RegSys retweeted
Siqi Shen@sshen8213 Jul 2022
I will present scGAD with a poster at X-008 tomorrow (Jul 13rd) and with a talk at #ISMB2022 #RegSys COSI on Thursday (Jul 14th) at 14:35pm, CDT, at room: Madison A. Join if you are interested! academic.oup.com/bioinformat…

scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data

AbstractSummary. Quantitative tools are needed to leverage the unprecedented resolution of single-cell high-throughput chromatin conformation (scHi-C) data

academic.oup.com
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Excited about #RegSys starting today. Check out posters X-032 (@BrittanyABaur,regulatory variation/3D genome), X-034 (@espjunha, matrix factorization on scRNAseq datasets) and X-036 (@SaraAKnaack bulk omic datasets to define modular GRNs in plants and mammals).
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Fantastic day 1 of @ISCB_RegSys COSI 3⃣excellent keynotes: @JulioSaezRod+@LuciaScience+@satijalab 2⃣insightful proceedings: Sara Mohammad Taheri+@MingboCheng 7⃣great talks #SingleCell #MultiOmics #DataIntegration #GeneRegulation #Network #ISMB2022 🔗iscb.org/ismb2022-program/ab…
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@LuciaScience sharing her work at @ISCB_RegSys Keynote on how sleep and autism are related
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Come check out my poster today at #ISMB2022 @ISCB_RegSys at poster slot X5 (the last row!) between 12:30-14:30 if you would like to hear about how we annotate scATAC-seq clusters!
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ISCB RegSys retweeted
Avi Srivastava@k3yavi11 Jul 2022
#ISMB2022 Excited to meet my colleagues in-person! I am giving a talk about scChromHMM at @ISCB_RegSys on July 13 from 5:40-6:00 CDT. I'd love to discuss about single-cell epigenomic data integration and genome segmentation. nature.com/articles/s41587-0…
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1/Corrected proof and HTML version of "Assessing and assuring interoperability of a genomics file format" now available on the website of Bioinformatics! doi.org/10.1093/bioinformati…
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ISCB RegSys retweeted
Alex Stein@astein725 May 2022
Very proud to introduce ScisorWiz - a tool for visualizing long-read, single-cell differential isoform expression! It's easy to use and customizable based on individual needs! Huge thank yous to @noush_joglekar, @cheesepuuff, and @hagentilgner! academic.oup.com/bioinformat…

ScisorWiz: visualizing differential isoform expression in single-cell long-read data

AbstractSummary. RNA isoforms contribute to the diverse functionality of the proteins they encode within the cell. Visualizing how isoform expression diffe

academic.oup.com
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"MOJITOO: a fast and universal method for integration of multimodal single-cell data" is published in ISMB proceedings (tinyurl.com/47vpmdc2) with extended benchmarking and an comprehensive website costalab.github.io/MOJITOO/. Check the talk by @MingboCheng at @ISCB_RegSys!
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I am delighted to announce our new paper "HiFine", a new binning refinement method to integrate both Hi-C-based and shotgun-based methods. @jeffery_sun, @qcb_usc doi.org/10.1093/bioinformati…
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ISCB RegSys retweeted
Javier Santoyo@jsantoyo9 Apr 2022
scGraph: a graph neural network-based approach to automatically identify cell types. #SingleCell #CellTypeIdentification #NeuralNetwork academic.oup.com/bioinformat… #Bioinformatics
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ISCB RegSys retweeted
Wancen Mu@WancenM2 May 2022
airpart is published!It can identify differential allelic imbalance(AI) across cell states from scRNA-seq or dynamic AI over spatial/temporal data.Provides groups of genes and cells under common cis-regulation mechanisms,e.g.shared set of expressed TF(1/5) doi.org/10.1093/bioinformati…

Airpart: interpretable statistical models for analyzing allelic imbalance in single-cell datasets

AbstractMotivation. Allelic expression analysis aids in detection of cis-regulatory mechanisms of genetic variation, which produce allelic imbalance (AI) i

academic.oup.com
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