
Investigating biophysics of living systems through an integrative lens . PI: Ahmed El Hady ( @zamakany ) . For inquiries, email: [email protected]
Konstanz
Joined June 2021
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Integrative Biophysics Group retweeted
Very excited to welcome @IntBioPhysics newest PhD student Matheus Stefanini Mariano who did his bachelor and masters in physics at Universidade de São Paulo (USP) . Very much looking forward to work with Matheus on a variety of projects.
In his doctoral research, he is planning to investigate how behavioral patterns, their temporal organization, and the objectives underlying them can be inferred from tracking data using machine learning methods. Ultimately, he aims to connect these data-driven representations with mechanistic models of the underlying behavioral dynamics. For more information, please check his website: matheus-stefanini-mariano.gi….
Integrative Biophysics Group retweeted
If you happen to be around NYU on May 4th , come see Jacob Davidson and myself speaking about our latest work developing algorithms for social behavior analytics. All details are on the poster below, reach out if you are around.
Integrative Biophysics Group retweeted
After three years of working on this review with my collaborator Emily Jane Dennis from Janelia Farm Research Campus , it is finally in press. The review provides an overview and our personal reflections on what constitutes an integrative approach to neurobiology of foraging. Pretty pertinent discussion today as foraging is becoming a topic of interest for many neuroscientists. Enjoy the review
annualreviews.org/content/jo…
Integrative Biophysics Group retweeted
Can one bring together Reinforcement learning and Drift Diffusion models to unravel cognitive mechanisms underlying collective foraging ?
Congrads to Jonathan Marienhagen , Lisa Blum Moyse and Dominik Deffner on this new study. Very happy that @IntBioPhysics postdoc Lisa and myself were part of this collaboration.
Preprint here: osf.io/preprints/psyarxiv/a3…
Integrative Biophysics Group retweeted
Look at those cute NYC rats running around :D
New preprint!
tl;dr — We ran around late at night to record wild rats in NYC and figured out how to quantify their behavior and environment. 🧵
w/ Dima Batenkov, @zamakany, @e_mackevicius
biorxiv.org/content/10.1101/…
Integrative Biophysics Group retweeted
So happy this paper is finally out in PRX Life (journals.aps.org/prxlife/abs… ) . Let me tell you more about the story of this paper in this thread :
Foraging is my big passion and step by step I hope to develop a general theory of foraging , predicting decision strategies from the individual to the social. This time we are extending our foraging models to the social domain. Along with a very talented postdoc in my
@IntBioPhysics group Lisa Blum Moyse , we developed an analytically tractable model to predict social foraging strategies in an egalitarian group . We assumed that agents would couple through different social information sharing mechanisms as shown in this figure and derived the strategies analytically , we got some exciting results:
This Post is from an account that no longer exists. Learn more
Integrative Biophysics Group retweeted
Check out this exciting junior scientist workshop focusing on theoretical biophysics . Deadline June 10, 2025
Link: janelia.org/you-janelia/conf…
We are inviting postdocs and graduate students working on a variety of problems in theoretical biophysics, broadly defined.
Topics include but not limited to :
Physical principles underlying biological function in molecular, cellular, multicellular systems
Theory of organismal development
Theory of animal behavior, ecological systems, and evolutionary dynamics
Data driven identification of principles in biophysical systems
Physics of active matter
Non–equilibrium thermodynamics of living systems
Integrative Biophysics Group retweeted
If you are around in Berlin , make sure to mark your calendar on May 13th when I will be giving my seminar hosted by @liviadehoz . All details
In this link : sfb1315.de/events/integratio…
Integrative Biophysics Group retweeted
Deadline for the Konstanz School of Collective Behavior 2025 is approaching. Apply now :D
Deadline: April 15th, 2025.
Plz share around : The tradition continues, the Konstanz School of Collective Behavior will take place from July 21st to August 8th , 2025.
Application deadline: April 15
( exc.uni-konstanz.de/kscb/app… ) .
We have an amazing line up of speakers covering all aspects of collective behavior across a variety of systems ( more faculty to be added) :
Iain Couzin ( Max Planck Institute of Animal Behavior , Konstanz) @icouzin
Peter Dayan ( Max Planck Institute of Biological Cybernetics, Tübingen) @MPICybernetics
Ilya Nemenman ( Emory University , USA) @INemenman
Yonatan Loewenstein ( Hebrew University of Jerusalem, Israel) @ELSCbrain
Aneta Koseska ( Max Planck Institute of Neurobiology of Behavior, Bonn) @KoseskaL
Francesco Ginelli ( Università degli Studi dell'Insubria, Italy)
Thejasvi Ravindra Beleyur ( Max Planck Institute of Animal Behavior, Konstanz) @BeleyurThejasvi
Liang Li ( Max Planck Institute of Animal Behavior, Konstanz)
Giovanni Reinna ( University of Konstanz, Konstanz) @joefresna
Einat Couzin-Fuchs ( University of Konstanz, Konstanz ) @einatcouzin
Ofer Feinermann ( Weizmann Institute of Sciences, Israel) @WeizmannScience
Naama Brenner ( Israel Institute of Technology, Israel) @TechnionLive
Ariana Strandburg-Peshkin ( Max Planck Institute of Animal Behavior , Konstanz) @ariSPeshkin
Wataru Toyokawa (Riken Center for Brain Science in Tokyo). @WataruToyokawa
Raphaela Heesen ( University of Konstanz, Konstanz)
Caroline Schuppli ( Max Planck Institute of Animal Behavior , Konstanz) @carolschuppli
Michael Chimento ( University of Konstanz, Konstanz) @evogom
@CBehav @MPI_animalbehav @UniKonstanz
Integrative Biophysics Group retweeted
One of the main insights of our new paper is that when studying social patch foraging, it is crucial to look beyond patch residence time , looking into metrics characterizing the accuracy of inferring patch quality and group cohesion certainly increase our understanding of decision strategies.
Check more here : arxiv.org/abs/2503.02794
Replying to @zamakany
Our study suggests that although a widely used
metric in foraging studies is patch residence time (a key
variable in the Marginal Value Theorem ) accuracy of inferring patch quality and group cohesion may be of critical importance to characterize group patch foraging dynamics .
Integrative Biophysics Group retweeted
Check out this junior scientist workshop @HHMIJanelia that I am co-organising with @AllysonSgro and Magdalena Schneider on Theoretical Biophysics ( Application deadline: June 10th, 2025, website: janelia.org/you-janelia/conf…) .
Participants will include only students and postdocs working on a variety of problems in theoretical biophysics, broadly defined. Topics include but not limited to :
· Physical principles underlying biological function in molecular, cellular, multicellular systems
· Theory of organismal development
· Theory of animal behavior, ecological systems, and evolutionary dynamics
· Data driven identification of principles in biophysical systems
· Physics of active matter
· Non–equilibrium thermodynamics of living systems
Students + postdocs in theoretical biophysics 👉 Join us @HHMIJanelia in October to present your research, engage in lively discussions, and network with peers.
✈️ Hotel, meals, & travel covered
Learn more + apply by June 10 @ janelia.news/THB25
@HHMINews @zamakany @AllysonSgro
Integrative Biophysics Group retweeted
Plz RT: @CBehav @MPI_animalbehav
Reminder that deadline is January 5th, 2025
School on the Origins of Life, Behavior and Cognition
March 10-21, 2025
ICTP-SAIFR, São Paulo, Brazil
Application Deadline: January 5th, 2025
School on Origins is an interdisciplinary school that tackles the foundational questions concerning the origins of biophysical systems which include but are not limited to : molecular, cellular, neural and behavioral systems. We aim to find principles shared across systems using tools from statistical physics, mathematical analysis and numerical simulations to explore these questions. We have invited researchers that work both on the experimental and theoretical side to cover a variety of biophysical systems and theoretical approaches. The school is aimed at graduate students either at the master’s or PhD level who have a strong quantitative background and a keen interest to pursue interdisciplinary research.
We invite students pursuing degrees in physics, computer science, engineering, or mathematics. Those pursuing degrees in biology need to provide evidence of strong and extensive quantitative background in topics such as calculus, dynamical systems and numerical programming.
There is no registration fee and limited funds are available for travel and local expenses.
Organizers:
Ahmed El Hady (Cluster of Excellence Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Germany)
Antonio C. Roque (USP Ribeirão Preto, Brazil)
Daniel Y. Takahashi (UFRN, Brazil)
Lecturers:
Suzanne Still (University of Hawaii at Mānoa, USA)
Randall Beer (Indiana University Bloomington, USA)
Asif Ghazanfar (Princeton University, USA)
Don Katz (Brandeis University, USA)
Gandhimohan M. Viswanathan (Universidade Federal do Rio Grande do Norte – UFRN, Brazil)
Bruno Mota (Federal University of Rio de Janeiro, Brazil)
Ana Amador (University of Buenos Aires, Argentina )
All details and application procedure can be found here: ictp-saifr.org/solbc2025/
Integrative Biophysics Group retweeted
Plz share and RT widely among your networks:
Deadline is Dec 28, 2024 for a very exciting school in the beautiful city of São Paulo Brazil.
School on Origins of life, behavior and cognition will take students into a tour de force through state of the art approaches in modeling cellular, biophysical and behavioral systems. We have a great line up of speakers and all info are on the website:
ictp-saifr.org/solbc2025/
The school is also just after Carnival :D
@CBehav @ictpsaifr @ictpnews @IntBioPhysics
Integrative Biophysics Group retweeted
Good morning everyone, our group at @CBehav and @MPI_animalbehav is pushing the boundaries of the theoretical understanding of social foraging. Check out the new study from my group @IntBioPhysics , preprint here: arxiv.org/abs/2412.02381
More to come in the coming months 😎
Foraging is my big passion and step by step I hope to develop a general theory of foraging , predicting decision strategies from the individual to the social. This time we are extending our foraging models to the social domain. Along with a very talented postdoc in my @IntBioPhysics group Lisa Blum Moyse , we developed an analytically tractable model to predict social foraging strategies in an egalitarian group . We assumed that agents would couple through different social information sharing mechanisms as shown in this figure and derived the strategies analytically , we got some exciting results:
Integrative Biophysics Group retweeted
Foraging is my big passion and step by step I hope to develop a general theory of foraging , predicting decision strategies from the individual to the social. This time we are extending our foraging models to the social domain. Along with a very talented postdoc in my @IntBioPhysics group Lisa Blum Moyse , we developed an analytically tractable model to predict social foraging strategies in an egalitarian group . We assumed that agents would couple through different social information sharing mechanisms as shown in this figure and derived the strategies analytically , we got some exciting results:
RT @zamakany: Today we had full house at the (almost) monthly @IntBioPhysics research symposium . Instead of doing a weekly group meeting…
Integrative Biophysics Group retweeted
Plz retweet this exciting school announcement 🙌🏾:
School on the Origins of Life, Behavior and Cognition
Dates : March 10-21, 2025
Location: ICTP-SAIFR, São Paulo, Brazil
Application Deadline: December 28, 2024
All details and application procedure can be found here: ictp-saifr.org/solbc2025/
School on Origins is an interdisciplinary school that tackles the foundational questions concerning the origins of biophysical systems which include but are not limited to : molecular, cellular, neural and behavioral systems. We aim to find principles shared across systems using tools from statistical physics, mathematical analysis and numerical simulations to explore these questions. We have invited researchers that work both on the experimental and theoretical side to cover a variety of biophysical systems and theoretical approaches. The school is aimed at graduate students either at the master’s or PhD level who have a strong quantitative background and a keen interest to pursue interdisciplinary research.
We invite students pursuing degrees in physics, computer science, engineering, or mathematics. Those pursuing degrees in biology need to provide evidence of strong and extensive quantitative background in topics such as calculus, dynamical systems and numerical programming.
There is no registration fee and limited funds are available for travel and local expenses.
Organizers:
Ahmed El Hady (Cluster of Excellence Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Germany.)
Antonio C. Roque (USP Ribeirão Preto, Brazil)
Daniel Y. Takahashi (UFRN, Brazil)
Lecturers:
Suzanne Still (University of Hawaii at Mānoa, USA)
Randall Beer (Indiana University Bloomington, USA)
Asif Ghazanfar (Princeton University, USA)
Don Katz (Brandeis University, USA)
Gandhimohan M. Viswanathan (Universidade Federal do Rio Grande do Norte – UFRN, Brazil)
Bruno Mota (Federal University of Rio de Janeiro, Brazil)
Ana Amador (University of Buenos Aires, Argentina )
Integrative Biophysics Group retweeted
I am resharing this amazing lecture by John Hopfield . I had the pleasure of attending it back in 2010 at the Kavli Institute for Theoretical Physics @KITP_UCSB program on theory in neuroscience and it shaped a lot of my thinking
One of the lectures by John Hopfield that I enjoy very much, on the role of theory in neuroscience . I had the great pleasure attending it at the KITP . Check out this snipet and the full lecture is here: online.kitp.ucsb.edu/online/…
Integrative Biophysics Group retweeted
Find our program here:
Conferences | Research | Collective Behaviour (uni-konstanz.de)
or here:
neurobiology-konstanz.com/#b…
Speakers are:
@icouzin @JohannesLarsch @LisanneSchulze @PRomanczuk @LilachAvitan @KatrinVogt3 @AnnikaCichy and Lisa Blu-Moyse from the @IntBioPhysics
Integrative Biophysics Group retweeted
Konstanz school of collective behavior is a great success. Can't wait for the 2025 version @CBehav . News : exc.uni-konstanz.de/collecti…. .

















