@Ixorer

M.D and Ph.D Student of Biochemical Sciences. @FurlanLab member

 Mexico City
Joined May 2010
  • Tweets1.5K
  • Following1.2K
  • Followers255
27Media
Abraham Román retweeted
Ming "Tommy" Tang@tangming2005Oct 4
Two tools for plotting genomics data: figeno: Tool for making genomics figures in #python. github.com/CompEpigen/figeno Plotting Multi-omic Data with plotgardener in #rstats phanstiellab.github.io/plotg…
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Abraham Román retweeted
Valdes_Lab@Valdes_Lab_Oct 2
How does Polycomb know where to go—and how does it find its way back after being lost? This question has intrigued me for years. In our new work, we revisit it using reversible SUZ12 depletion in mESCs and provide additional clues about early PRC2 re-establishment.
https://link.springer.com/article/10.1186/s13072-026-00695-w#citeas

ALT https://link.springer.com/article/10.1186/s13072-026-00695-w#citeas

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Two interesting review papers on long-range gene regulation nature.com/articles/s41588-0… and nature.com/articles/s41588-0…

Mechanisms and functional implications of long-range enhancer-dependent gene regulation

Nature Genetics - Development depends on gene regulation by enhancers across long genomic distances. This Perspective discusses mechanisms enabling long-range enhancer–promoter communication...

nature.com
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Abraham Román retweeted
Philippe Batut@philippe_batutSep 11
🧬🧪🔬Why are enhancers transcribed? How does it impact gene regulation? I’m excited to share our new paper in @ScienceMagazine showing that ncRNAs control the timing of gene activation in embryos. w/Mike Levine #ScienceResearch #RNA A few highlights 🧵👇 science.org/doi/10.1126/scie…

Noncoding transcription controls the developmental dynamics of long-range gene regulation

The genomic regions regulating gene expression are often themselves transcribed into a variety of noncoding RNAs (ncRNAs). However, the regulatory roles of this noncoding transcription remain largely...

science.org
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Abraham Román retweeted
Furlan-Magaril_lab@FurlanLabAug 25
A new manuscript from the lab!! Come have a read. A great effort from Karina Jácome and all authors. Congratulations!! We experimentally classified domain boundaries and discovered new proteins contributing to boundary function. track.smtpsendmail.com/90321…

Chromatin accessibility classification of TAD boundaries discloses new architectural proteins

Abstract. 3D genome organization is crucial to modulate gene expression. Topologically associating domain boundaries isolate genes and their regulatory ele

academic.oup.com
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Abraham Román retweeted
Ming "Tommy" Tang@tangming2005Jun 16
Someone asks me every other week if AI is going to replace bioinformaticians. A new npj Digital Medicine paper finally said what I have been telling them for two years.
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Abraham Román retweeted
Furlan-Magaril_lab@FurlanLabJun 15
Have a look at our recent publication!! Congratulations Abraham Roman-Figueroa @Ixorer and all co-authors. Nr5a2 is giving us a lot to study 🤗🤗 more coming soon!! link.springer.com/article/10…

NR5A2 controls gene expression and chromatin contacts of essential circadian metabolic genes in the...

Cellular and Molecular Life Sciences - Circadian regulation of gene expression relies on the coordinated action of core clock components, tissue-specific transcription factors, and epigenetic...

link.springer.com
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Abraham Román retweeted
Shan Meltzer
@shanmeltzer18 Dec 2024
I recently realized a lot of trainees don't really know the format of a compelling research presentation. I compiled a template that people can download on my lab website! A 🧵 to explain each component... 1. start with a nice title slide. shanmeltzerlab.com/about-3
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Transcription of one gene can be controlled from multiple regions of the genome. Learn more at smart-biology.com #biology #science #animation #3D #EdTech
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Abraham Román retweeted
Jonathan Kagan@jkagan1Feb 5
A fantastic innate immunity conference coming soon. Join us! youtu.be/xmQv36uYm7s?si=h2i6…

Innate Immunity Meeting Promo

Join us at the Keystone Symposia on Innate Immunity: Diversity in H...

youtube.com
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Abraham Román retweeted
Jonathan Kagan@jkagan1Feb 6
Too much data, too little thinking. A important essay from Ruslan Medzhitov on the importance of understanding data, not just generating it. A must read. @RMedzhitov @YaleIBIO nature.com/articles/s41577-0…
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El #IIBO te invita a su próximo #Seminario Institucional: Integración neuro-endocrino-inmune para una mejor aproximación etiológica a los trastornos del neurodesarrollo, presentado por el Dr. Gustavo Pacheco López, Rector General de la UAM | #AgendaIIBO 📅13 de febrero, ⏰12h
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Paper alert!! So happy to see this findings out from the lab 🤗Congratulations @kari_jacome and all other authors!! Chromatin accessibility classification of TAD boundaries discloses new architectural proteins biorxiv.org/content/10.1101/…

Chromatin accessibility classification of TAD boundaries discloses new architectural proteins

3D genome organization is crucial to modulate gene expression. Topologically Associated Domains (TADs) isolate genes and their regulatory elements within the same topological neighborhood, avoiding...

biorxiv.org
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Paper alert!! We share a cost-effective protocol to obtain clean and viable cell suspensions from breast tumor biopsies to perform scRNAseq and Hi-C! Congratulations to Aura Stephenson @AuraGussinye9 and everyone involved! @IFC_UNAM frontiersin.org/journals/mol…

Frontiers | Obtention of viable cell suspensions from breast cancer tumor biopsies for 3D chromatin...

Molecular and cellular characterization of tumors is essential due to the complex and heterogeneous nature of cancer. In recent decades, many bioinformatic t...

frontiersin.org
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Abraham Román retweeted
Mitch Guttman@mitchguttman27 Nov 2024
Gene regulation involves thousands of proteins that bind DNA, yet comprehensively mapping these is challenging. Our paper in @NatureGenet describes ChIP-DIP, a method for genome-wide mapping of hundreds of DNA-protein interactions in a single experiment. nature.com/articles/s41588-0…

ChIP-DIP maps binding of hundreds of proteins to DNA simultaneously and identifies diverse gene...

Nature Genetics - ChIP-DIP (ChIP done in parallel) is a highly multiplex assay for protein–DNA binding, scalable to hundreds of proteins including modified histones, chromatin regulators and...

nature.com
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👀 Si alguna vez has luchado con crear gráficos en R, presta atención 👀. ¡Te traigo una solución que te va a encantar! 🎉 📊 Con esquisse puedes crear gráficos increíbles en R sin tener que escribir código... ¡y en solo unos clics! 😱 #rstats #DataScience #dataviz #stats #code
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Abraham Román retweeted
Viri Ríos
@Viri_Rios14 Oct 2024
Le pregunté a @MazzucatoM si debemos temer que las empresas se vayan de 🇲🇽 México cuando subamos los salarios. Esto es lo que me comentó 👇🏽 Ve la entrevista completa aquí: youtu.be/DlvxwemEDQA?t=315
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El magnífico libro de R. C. Lewontin "No está en los genes" representa la crítica más demoledora al determinismo biológico y la mejor refutación de las teorías sobre la determinación genética de la inteligencia. Aquí dejo una selección de frases/reflexiones extraídas del mismo👇
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📊 Asegúrate de elegir el gráfico y los colores adecuados. #dataviz #stats #Analytics #MachineLearning #ML #ai #BigData #datamining #programming #RStats #Python #DataScientist #data #BI
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Abraham Román retweeted
Gabby
@thenaijacarguy31 Jul 2024
The rules for using colors in Data Visualization.
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