@JNMScience

Researcher @NaturalisMarine @museumnaturalis, Assistant Professor @UniLeiden. @leeselab alumnus. Utilizing molecular tools to study communities.

 Niederlande
scholar.google.com/citations?user=MsRUoEkAAAAJ&hl=en
Joined December 2009
  • Tweets1.2K
  • Following453
  • Followers604
190Media
Last days to register to the 2025 MeioScool in Japan ! #meiofauna meiodyssea.ifremer.fr/MeioSc…
1
2
147
📖Published📖 Pereira et al. developed the Intertidal Environmental Chamber: a modular, open-source system designed to realistically simulate the complex thermal environment of intertidal habitats 🌊 buff.ly/TzOusx7
2
7
760
UITOTO for taxonomy. Get your molecular diagnoses right without coding or breaking a sweat! Use state-specific, contrastive DMCs instead of fuzzy consensus barcodes! 🪰🦋🪱🦎🦀🐌🦉 doi.org/10.1101/2025.03.26.6…
14
34
1,761
COI Metabarcoding With a Curated Reference Database and Optimized Protocol Provides a Reliable Species-Level Diversity Assessment of Tardigrades Bartłomiej Surmacz et al. onlinelibrary.wiley.com/doi/…

COI Metabarcoding with a Curated Reference Database and Optimized Protocol Provides a Reliable...

Our study provides the first curated database of tardigrade COI sequences. New tardigrade metabarcoding protocol was tested and proved to be highly efficient compared to traditional morphological...

onlinelibrary.wiley.com
2
5
132
Jan Macher retweeted
Kevin Kocot@kmkocot15 Feb 2025
Taxonomy training workshops are an incredibly valuable experience for everyone involved. The next #ConfusingCrustaceans workshop will be in Wilhelmshaven, Germany from Oct. 6-10, 2025. See peracarida.org for more details. #Peracarida #SweatTheSmallStuff #IcyInverts
22
1
40
3,951
OrthoDB and BUSCO update: academic.oup.com/nar/advance…
7
21
1,735
Today our paper was published on the decline of taxonomic expertise, using the example of Hungary, based on several lines of evidence. It is open access in Biodiversity and Conservation. doi.org/10.1007/s10531-024-0…

Identification crisis: a fauna-wide estimate of biodiversity expertise shows massive decline in a...

Biodiversity and Conservation - Expertise in biodiversity research (taxonomy, faunistics, conservation with taxonomic background) appears to decline worldwide. While the “taxonomic...

link.springer.com
28
3
54
4,145
Thrilled to have published the final chapter of my dissertation. Our team quantified how MPs affect important ecosystem functions performed by meiofauna and macrofauna in marine sediments. @AdeleatSea @cneglecta @BioGeoSte @jeroeningels authors.elsevier.com/c/1jxWE…
3
4
270
"Dark matter zoology": let's not stop at revealing the species diversity of dark taxa; let's also understand how they respond to global change. Two studies, two answers (flies & spiders)! 🪰: doi.org/10.1186/s12915-024-0… 🕷️: doi.org/10.1111/ecog.07454 @mfnberlin @Brent_C_Emerson
1
23
43
3,039
Excited to share the final chapter of my PhD thesis has been published! 🎉 Country-wide DNA metabarcoding is now a reality, thanks to key advancements. Big thanks to my co-authors and all who supported me! @leeselab @Senckenberg Link: onlinelibrary.wiley.com/doi/…

Upscaling biodiversity monitoring: Metabarcoding estimates 31,846 insect species from Malaise traps...

Mitigating ongoing losses of insects and their key functions (e.g. pollination) requires tracking large-scale and long-term community changes. However, doing so has been hindered by the high divers...

onlinelibrary.wiley.com
20
1
65
4,795
More info about this PhD opportunity through JAE-PRE in soil biodiversity, ecology, evolution, and metabarcoding! 🌱🧬➡️csic.es/es/formacion-y-emple… Join our team at @IPNA_CSIC in Tenerife island! 🌍 If you have any doubts, contact Carmelo Andújar at [email protected]
SoilEvoEcoLab@SoilEvoEcoLab19 Jul 2024
🎓📢 Exciting PhD opportunity throught JAE-PRE grant! Join our team at @IPNA_CSIC in Tenerife. We're looking for a passionate researcher to explore soil arthropod biodiversity in primary forest, focusing on Mediterranean, tropical, and subtropical biomes🧬🔬
13
15
1,253
Traditional morphological methods and #metabarcoding show consistent results in assessing the impact of coastal protection measures on #meiofauna at Ahrenshoop, with notable recovery trends but long-term community changes. 🔗 doi.org/10.3897/mbmg.8.12768…
2
5
392
Our paper is published today in @Nature journal! If you want to know more about how communities interact across habitats and interaction types, and their effects on ecosystem functioning and stability, the paper is here🔽 nature.com/articles/s41586-0…

Multi-habitat landscapes are more diverse and stable with improved function

Nature - Species interaction data, a field experiment and modelling of plant–insect communities show that landscapes with more habitat types support more even species, more complementary...

nature.com
2
89
4
328
23,301
Read the story here: besjournals.onlinelibrary.wi…

Environmental DNA metabarcoding reveals temporal dynamics but functional stability of arthropod...

The study shows temporal dynamics of invertebrate succession in cattle dung by a multi-taxon approach. Functional redundancy was found within groups of beetles and flies important for dung decompos...

besjournals.onlinelibrary.wiley.com
1
3
281
Discovery of deep-sea acoels from a chemosynthesis-based ecosystem royalsocietypublishing.org/d…
5
29
1,354
Are you fascinated by the invisible? Do you love microscopy and imaging approaches? Are you ready to test cutting-edge technology and innovative tools to overcome the taxonomic impediment? This post-doc position is for you! talentdetection.com/ifremer/…
2
1
9
893
We are hiring! @Ifremer_fr postdoc opportunity on #meiofauna #imaging #biodiversity and #taxonomy in the context of the #MEIODYSSEA project🪱 🦐🦠 talentdetection.com/ifremer/…
6
4
419
This study casts light on forested stream food webs in the tropics - the figure below references the trivariate approach first described by Cohen et al. (2003) for Tuesday Lake: the food web, average body sizes (here trophic level), and numerical abundance besjournals.onlinelibrary.wi…

Untangling the complex food webs of tropical rainforest streams

We described a tropical stream food web and estimated its stability. We found stable systems where species contributed to ecosystem functioning in two ways: A diverse set of small taxa contributes...

besjournals.onlinelibrary.wiley.com
1
16
45
5,205
Check @andynudi's first PhD paper for an update of reference databases for gastropods and genetic reference inequity. Still many gaps out there in barcoding coldspots, waiting to be filled up by sequencing efforts!
Andrew Torres@andynudi6 Jul 2024
Oof, first PhD paper is finally out! 😮‍💨 Check it out here! doi.org/10.1007/s10531-024-0…

Global species hotspots and COI barcoding cold spots of marine Gastropoda

Biodiversity and Conservation - With the on-going efforts in digitising museum collections, increased participation of citizen scientists, and greater accessibility to research data, accurately...

link.springer.com
1
1
9
512
Finally, I found away of combining my research interests into marine invertebrates and insect symbiosis by working on the microbiome of kelp flies! Have a look at our paper, a nice collaboration with @TBartolomaeus @Loeber_U @MDC_Berlin @ChariteBerlin link.springer.com/article/10…
5
40
2,131
Load more