
Postdoctoral researcher | @BrandesLab | Long non-coding RNAs, epigenetics and chromatin in the cardiovascular system @UofGlasgow alumnus 🏴
Frankfurt on the Main, Germany
Joined September 2020
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Importantly, enhancers lost after lncRNA depletion could be mapped with Hi-C to the promoters of differentially expressed genes.
(6/7)
We next identified the top SWI/SNF-sensitive open chromatin regions using a SWI/SNF PROTAC and ATAC-seq. Enhancers 'lost' after PROTAC also corresponded to enhancers lost after lncRNA depletion.
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Remarkably, depletion of SWI/SNF-bound lncRNAs using an siRNA library followed by CUT&RUN revealed a LOSS of SWI/SNF binding at enhancers and a relative GAIN of binding at promoters.
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iCLIP revealed lncRNAs as the most positively enriched class of SWI/SNF-bound RNA. Binding of lncRNAs to SWI/SNF occurred at a higher frequency than would be expected.
The top candidate lncRNAs were mostly trans-acting in nature, based on RedChIP data.
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SWI/SNF lacks a DNA recognition motif yet achieves precise enhancer targeting.
Using RedChIP and CUT&RUN approaches, we show that RNA-DNA interactions are enriched with SWI/SNF.
The majority of these RNAs are trans-acting and bind cell type-specific enhancers.
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Absolutely thrilled to have received the 2022 Rudi Busse award from the medical faculty of @goetheuni for my #PhD thesis on #lncRNA maintenance of #gene expression and #genome stability. Very nice ceremony tonight at the Dies Academicus in Frankfurt. – at Frankfurt on the Main, Germany
And even more delighted to have won an @RNASociety poster prize at #RNA23. Thanks again to everyone who came to my poster to have a chat and thanks to those who organised the meeting.
@BrandesLab @trr267 @jrRNAscientists – at Singapore
Delighted to have been given the opportunity by the @RNASociety to present my work at #RNA23 #RNA2023 in #Singapore. Had great discussions about #lncRNA regulation of #chromatin complexes in #endothelial #gene #expression.
@RNASociety @jrRNAscientists @BrandesLab – at Singapore
🚨Our paper on the role of #lncRNA PCAT19 in #endothelial quiescence, and its implications for #cardiovascular disease, has just been published in @CellReports! 🎉 Featured on cell.com/cell-reports/fullte….
#RNA #vascular @CellPressNews #DNA #ScienceTwitter – at Frankfurt on the Main, Germany
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