@OmicsWeekly

Weekly trends and developments in spatial -omics.

omics.substack.com/
Joined January 2023
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Hello World. Excited to publish my first post in a new weekly science newsletter to kickoff 2023! Follow along for free weekly trends and developments in the fast growing field of #spatial #omics. omics.substack.com/p/spatial…
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Spatial Omics Weekly retweeted
Eddie Ruiz
@Ed2uizAug 14
Can modern databases scale scientific analyses beyond RAM? During my PhD, I explored whether matrix, spatial, and genomic operations could share a database execution layer without changing the APIs scientists rely on. Today, I’m excited to finally share dbverse, a composable database framework built around that idea. Across benchmarks, dbverse delivers up to 1,000× speedups and scales end-to-end spatial omics analyses to millions of cells on a 16 GB M4 Mac mini. Paper: biorxiv.org/content/10.64898… 1/🧵

dbverse scales spatial omics analysis with embedded analytical databases

Spatial omics datasets are increasing in size and complexity, exceeding the memory of standard computers and thereby limiting data analysis. Here we present dbverse, a framework for larger-than-mem...

biorxiv.org
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In the past week of #spatialomics there were: ~28 related preprints published on bioRxiv ~31 related publications found on PubMed ~176 related tweets on Twitter 24 commits to #spatialomics repos on Github More trends in bio link 🧵1/5
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Here were the top 🖐️ #spatialomics publications by altmetric scores that appeared in our search this past week. 🧵 4/5
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There were a total of 24 commits in select #opensource #spatialomics Github repos this past week. 🧵 5/5
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In the past week of #spatialomics there were: ~20 related preprints published on bioRxiv ~31 related publications found on PubMed ~252 related tweets on Twitter 13 commits to #spatialomics repos on Github More trends in bio link 🧵1/5
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Here were the top 🖐️ #spatialomics publications by altmetric scores that appeared in our search this past week. 🧵 4/5
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There were a total of 13 commits in select #opensource #spatialomics Github repos this past week. 🧵 5/5
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In the past week of #spatialomics there were: ~20 related preprints published on bioRxiv ~18 related publications found on PubMed ~224 related tweets on Twitter 20 commits to #spatialomics repos on Github More trends in bio link 🧵1/5
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Here were the top 🖐️ #spatialomics publications by altmetric scores that appeared in our search this past week. 🧵 4/5
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There were a total of 20 commits in select #opensource #spatialomics Github repos this past week. 🧵 5/5
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In the past week of #spatialomics there were: ~17 related preprints published on bioRxiv ~41 related publications found on PubMed ~235 related tweets on Twitter 28 commits to #spatialomics repos on Github More trends in bio link 🧵1/5
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Here were the top 🖐️ #spatialomics publications by altmetric scores that appeared in our search this past week. 🧵 4/5
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There were a total of 28 commits in select #opensource #spatialomics Github repos this past week. 🧵 5/5
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