@QuantbioG

The Quantum Biology and Computational Physics research group at the Carl von Ossietzky University of Oldenburg (Germany) is headed by Prof. Dr. Ilia Solov'yov.

 Oldenburg
quantbiolab.com/
Joined November 2020
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  • Following116
  • Followers151
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PhD position // Spin Chemistry // University of Oldenburg uol.de/en/job/phd-position-2…
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PhD position // University of Oldenburg uol.de/en/job/phd-position-1…
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Our recent work by my postdoc @FabianSchuhmann pubs.acs.org/doi/10.1021/acs…

Physics-Based Protein Networks Might Recover Effectful Mutationsa Case Study on Cathepsin G

Abstract. Molecular dynamics simulations have been remarkably effective for observing and analyzing structures and dynamics of proteins, with longer trajec

pubs.acs.org
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Thank you Fabian and Ilia @QuantbioG for support with Viking, Lau for all the hard work and the SDU eScience Center and NNF Robust for resources. @lundbeckfonden @novonordiskfond
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QuantBio Group retweeted
Fabian@FabianSchuhmann23 Jul 2024
iopscience.iop.org/article/1… A very fun project reached its conclusion in this latest published manuscript. With Jonathan and @QuantbioG, we look at and utilize the (surprising) negative eigenvalues in positiv semi-definit matrices :). Check it out!

Spurious negative eigenvalues of numerical variance-covariance matrices in many-body systems...

Spurious negative eigenvalues of numerical variance-covariance matrices in many-body systems correlate with the existence of frozen degrees of freedom, Hungerland, Jonathan, Solov’yov, Ilia A,...

iopscience.iop.org
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Our Roadmap paper, Condensed Matter Systems Exposed to Radiation: Multiscale Theory, Simulations, and Experiment pubs.acs.org/doi/10.1021/acs… is finally out in Chemical Reviews
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QuantBio Group retweeted
Fabian@FabianSchuhmann14 May 2024
Our article was published in #moleculardiversity, available at rdcu.be/dHQOJ! With Felicitas Finke, @johungerland, and @QuantbioG, we discuss how receptor structures built with @SWISS_MODEL or #AlphaFold behave in #drugscreening for the tick-born #encephalitis virus.
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QuantBio Group retweeted
Jingjing Xu@Jingjing2203075 May 2024
Great honor to be invited to attend the workshop on Quantum Effects in biological systems. quebs.org This year the workshop is held by Huazhong University of Science and Technology @HuazhongUST I am looking forward!
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A collaboration involving @QuantBioG, @KattnigDaniel, & @FabianSchuhmann used coarse-grained MD simulations to investigate the long-lived states and conformational changes in pigeon cryptochrome 4, the major contender protein to underpin magnetoreception. go.acs.org/95q

Structural Rearrangements of Pigeon Cryptochrome 4 Undergoing a Complete Redox Cycle

Abstract. Cryptochrome is currently the major contender of a protein to underpin magnetoreception, the ability to sense the Earth’s magnetic field. Among v

pubs.acs.org
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QuantBio Group retweeted
SFB 1372@SFB_137218 Apr 2024
Spread the word: we're #hiring We offer two short-term #fellowships for master's degree holders and PhD-candidates (6-12 months) to excellent researchers, who are interested in doing research within one dedicated project of our CRC sfb1372.de/jobs
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We are happy to introduce our latest program ALISE- the Automated Ligand Searcher, which was made possible because of the great collaborative effort of @FabianSchuhmann @LuiseJacobsen @johungerland. pubs.acs.org/doi/full/10.102…

Introducing the Automated Ligand Searcher

Abstract. The Automated Ligand Searcher (ALISE) is designed as an automated computational drug discovery tool. To approximate the binding free energy of li

pubs.acs.org
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QuantBio Group retweeted
SIAM@TheSIAMNews16 Aug 2023
Neutrophil elastase and cathepsin G are similar #proteins with disparate functions. In SIAM News Online, @FabianSchuhmann develops a workflow to compare conformational changes in these proteins, despite the different lengths of their amino acid sequences: sinews.siam.org/Details-Page…
The modeled protein structures of neutrophil elastase and cathepsin G.

ALT The modeled protein structures of neutrophil elastase and cathepsin G.

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The group had a fun summer party, now almost traditional, at Prof. Ilia's place. Thanks to everyone who helped organize!
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Last Friday our @siuyingalice defended her Ph.D. thesis with an amazing presentation and after masterfully answering the questions from the committee. Congratulations and good luck in your future career!
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Join us in Copenhagen in Dec-2023 for a Mighty Workshop in MD simulations with @BonomiMax @CovinoLab @drannaduncan @eriklindahl @ProfSyK @WPezeshkian Only 40 seats ! Free registration Program: mdmeeting2023.wordpress.com/ Reg. link: bit.ly/3rb53np @novonordiskfond

Advanced Methods in MD 2023: 11-12th December, Copenhagen, Denmark

Visit the post for more.

mdmeeting2023.wordpress.com
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QuantBio Group retweeted
Fabian@FabianSchuhmann16 Jun 2023
Poster Session at the biomolecules and nanostructures 8 conference near Krakow talking about Simbols (gitlab.uni-oldenburg.de/quan…)
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Our members, @FabianSchuhmann and Katarina Kretschmer presented their latest work with posters at the Biomolecules and Nanostructures 8 conference in Kraków, Poland. #biomolecules #nanostructures Congratulations!
A banner of the scientific conference and two young scientists standing on each side.

ALT A banner of the scientific conference and two young scientists standing on each side.

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We are #hiring! At @UniOldenburg, 2 new #PhDposition are available for those interested in #biophyscis #magnetoreception #physics #phdchat Deadline to apply is the 7th of July.
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Congratulations to @CompPhysGuy on a publication in @J_A_C_S! Transient absorption spectroscopy and quantum-/MD electron transfer simulations were used to compare wild-type ErCry4a and four phenylalanine mutants. pubs.acs.org/doi/10.1021/jac… @ACSPublications #magnetoreception @SFB1372

Tracking the Electron Transfer Cascade in European Robin Cryptochrome 4 Mutants

Abstract. The primary step in the mechanism by which migratory birds sense the Earth’s magnetic field is thought to be the light-induced formation of long-

pubs.acs.org
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Our members' @FabianSchuhmann and @GerhardsLuca newest publication in @PLOSONE demonstrates new tools for similarity measurements that can be applied to compare atomic movements or bird migration pathways. journals.plos.org/plosone/ar…

Across atoms to crossing continents: Application of similarity measures to biological location data

Biological processes involve movements across all measurable scales. Similarity measures can be applied to compare and analyze these movements but differ in how differences in movement are aggregated...

journals.plos.org
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