CHARLES KAYUKI (@REXCHAS) profile picture

CHARLES KAYUKI

@REXCHAS

Researcher | Molecular biology l Biotechnology | Nanopore sequencing.

 Dar es Salaam, Tanzania
Joined April 2010
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Photo by CHARLES KAYUKI (@REXCHAS)Photo by CHARLES KAYUKI (@REXCHAS)Photo by CHARLES KAYUKI (@REXCHAS)Photo by CHARLES KAYUKI (@REXCHAS)Photo by CHARLES KAYUKI (@REXCHAS)Photo by CHARLES KAYUKI (@REXCHAS)Photo by CHARLES KAYUKI (@REXCHAS)Photo by CHARLES KAYUKI (@REXCHAS)Photo by CHARLES KAYUKI (@REXCHAS)Photo by CHARLES KAYUKI (@REXCHAS)
#ICGEBCapeTown starts analysis on Oxford @nanopore technologies long read #sequencing devices: GridION & P2 Solo providing full range of sequencing options from viral through to human whole genome sequencing. @ICGEB team in training & Plant Systems Biology group in action 👇
Image from ICGEB Cape Town (@ICGEBCapeTown)
Image from ICGEB Cape Town (@ICGEBCapeTown)
Image from ICGEB Cape Town (@ICGEBCapeTown)
Image from ICGEB Cape Town (@ICGEBCapeTown)
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Have you applied to our #Research Development #Fellowship Programme? What we offer: ✅3️⃣- 9️⃣ month placement at a leading research institution in the UK, Europe or 🌍🌍 ✅Up to £47,000 available 🖊 Apply here: bit.ly/3A6E1lM 🗓 Deadline: 4 October 2024
Image from Africa Research Excellence Fund (@AREF_Africa)
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📣 We are pleased to launch 2⃣ #funding calls opportunities: 🔸 2024/25 AREF #Research Development Fellowship Programme. Deadline: 4 October 2024 🔸 Essential #GrantWriting Skills Programme Deadline: 30 August 2024 🔗 Apply here: bit.ly/4dx0zKM
Image from Africa Research Excellence Fund (@AREF_Africa)
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CHARLES KAYUKI retweeted
Miriam Huntley (@iam_mir_iam) profile picture
Miriam Huntley@iam_mir_iam11 Jun 2024
If you haven't refreshed your view of ONT with recent data you are miscalibrated: "A few years ago, a good ONT-only bacterial genome assembly would contain hundreds to thousands of errors" - "ONT-only bacterial genome assemblies now regularly have <10 errors"
Ryan Wick (@rrwick) profile pictureRyan Wick@rrwick11 Jun 2024
New blog post: rrwick.github.io/2024/06/11/… ONT-only bacterial assemblies are much better than they were only a couple of years ago. Often <10 errors in the whole genome. Does that mean that less short-read sequencing is required for polishing? See my post for the answer! (1/4)

Short-read depth recommendations for polishing

a blog for miscellaneous bioinformatics stuff

rrwick.github.io
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CHARLES KAYUKI retweeted
DIPLOMICS (@diplomics_sa) profile picture
DIPLOMICS
@diplomics_sa21 Sep 2023
3 DIPLOMICS node labs received their @nanopore P2 Solo sequencers this last week! We cant wait to see what UPGL, SAIAB-AGRP and UWC-SCGP do next - Happy sequencing :) #nextgeneration #sequencing #research #omics #DIPLOMICS @IMBM_Lab_UWC @NRF_SAIAB @UPTuks
Image from DIPLOMICS (@diplomics_sa)
Image from DIPLOMICS (@diplomics_sa)
Image from DIPLOMICS (@diplomics_sa)
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Analysis of anything, by anyone, anywhere as the goal of Oxford @nanopore seems an interesting approach to bringing sequencing technology closer to the Researcher. Great Introduction to Oxford Nanopore Technologies at The Oxford Nanopore Seminar today @WACCBIP_UG
Image from Maame Ekua Acquah (@acquah_maamekua)
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Are you in an East African country? Do you want to hear about the latest technical updates for Oxford Nanopore Technologies as well as talks from local scientists? Register for the first-ever in-person Nanopore Seminar in Nairobi, Kenya. nanoporetech.com/nanopore-se…
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London Calling 2023 is kicking off today with @nanopore workshops and masterclasses - there’s still time to join online at londoncallingconf.co.uk #nanoporeconf #nanopore
Image from Rosie Calderbank (@CalderbankRosie)
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CHARLES KAYUKI retweeted
Oxford Nanopore (@nanopore) profile picture
Oxford Nanopore
@nanopore16 May 2023
Are you ready for London Calling 2023? It all begins tomorrow... Register to join online here: bit.ly/41LlTG1 #nanoporeconf
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CHARLES KAYUKI retweeted
Adam Cribbs (@AdamCribbs) profile picture
Adam Cribbs@AdamCribbs7 Apr 2023
We use this CMI to assess the accuracy of @PacBio @illumina and @nanopore sequencing and observe something unexpected. #nanopore kit14 chemistry is more accurate than Illumina and pacbio. Using homotrimer correction we correct most CMI errors.
Image from Adam Cribbs (@AdamCribbs)
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🚨 CALL FOR APPLICATION 📌Africa CDC–Pathogen Genomics and Bioinformatics Fellowship Program offers the fellowship program. ✂️Application deadline: Friday, April 28, 2023, 5:00 PM (EAT) 📌Start of the fellowship : June 2023 📩Apply through the link: shorturl.at/xyPZ7
Image from Tanzania Human Genetics Organization (@humangeneticstz)
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CHARLES KAYUKI retweeted
Yves Kwibuka, PhD (@YKwibuka) profile picture
Yves Kwibuka, PhD@YKwibuka2 Mar 2023
Successful start of the day. The @nanopore is now operational for the #malaria #Pfalciparum sequencing at the #Centerfortropicaldiseases @ucbukavu . Thanks to the team @BahizireEsto #welmoed ...
Image from Yves Kwibuka, PhD (@YKwibuka)
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Wow wow wow... d(n_n)b... My lucky green day at #SirirajLongreadLab #SirirajGenomics
Image from Ekkapong Roothumnong (@EkkapongR)
Image from Ekkapong Roothumnong (@EkkapongR)
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Small, medium and large @nanopore set ups for us at our @HerpeZ4 and @UCL_CCM #tuberculosis #sequencing workshop at UTH in Zambia! Looking forward to the #bioinformatics section tomorrow! @Cantam_Network @JohnTembo1982
Image from PANDORA-ID-NET (@PandoraIDNet)
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First Cowpea DNA Sequencing test run on Mk1c MinIon Oxford Nanopore at the Africa Centre of Excellence WACCI, University of Ghana.
Image from John S.Y. Eleblu, Ph.D. (@JohnEleblu)
Image from John S.Y. Eleblu, Ph.D. (@JohnEleblu)
Image from John S.Y. Eleblu, Ph.D. (@JohnEleblu)
Image from John S.Y. Eleblu, Ph.D. (@JohnEleblu)
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Literally cannot get over the jump in quality from 112 to 114 on @nanopore MK1c. Beautiful run, no refueling, just gorgeous green screens. Second pic is at 3h. Are Kit14 flongles like this also? Checking soon. #insitulab @JhakelinReyes - more on this run soon.
Image from Mrinalini Watsa (@SurroundScience)
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Our P2Solo from @nanopore has finally arrived to add to our growing collection or sequencers! Looking forward to playing with a LOT more data! 🧬 💻
Image from UoP Sequencing & Bioinformatics Group (@UoPBioSeq)
Image from UoP Sequencing & Bioinformatics Group (@UoPBioSeq)
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New Year, New @Nanopore sequencer! Our trusty MinION in the bottom for scale. Looking forward to taking this P2 Solo for a spin!
A black brushed metal P2 Solo Nanopore sequencer, the size of a cheese grater, with two positions for attaching PromethION flow cells. A MinION sequencer, size of a USB dongle, is shown in bottom for scale.

ALT A black brushed metal P2 Solo Nanopore sequencer, the size of a cheese grater, with two positions for attaching PromethION flow cells. A MinION sequencer, size of a USB dongle, is shown in bottom for scale.

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CHARLES KAYUKI retweeted
Abdoulaye DJIMDE (@djimdeab) profile picture
Abdoulaye DJIMDE@djimdeab13 Jan 2023
Our @PDNA11 GEDIP GridIon has just been installed in our new PDNA lab. Getting ready for pathogens genomics to inform infectious disease management, “putting the fire off where it starts » to prevent next pandemics. Thanks @AfricaPGI @gatesfoundation @DrSimonHarris @EsteeTorok
Image from Abdoulaye DJIMDE (@djimdeab)
Image from Abdoulaye DJIMDE (@djimdeab)
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CHARLES KAYUKI retweeted
Noot (@nootlabs_) profile picture
Noot@nootlabs_9 Dec 2022
1/ Visualize your DNA for less than $10: A #diybio guide #labonthecheap
Image from Noot (@nootlabs_)
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