Analysis and visualization of ribosome profiling (#riboseq) data
Ireland
Joined August 2015
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Introns, exons and now translons: nature.com/articles/s41592-0…
A truly remarkable finding: biorxiv.org/content/10.1101/…
A tRNA decodes a base of rRNA that is normally used to verify the correct geometry of codon-anticodon pairing.
Ribosome profiling helps to reveal the first example of human mRNA translated in all three reading frames simultaneously: researchsquare.com/article/r…
A manuscript describing RiboSeq.Org is out in 2025 NAR db issue: doi.org/10.1093/nar/gkae1020
It introduced RiboSeq Data Portal: rdp.ucc.ie
RiboSeqOrg retweeted
Are you a PhD/postdoc interested in posttranscriptional regulation of gene expression? #EMBORiboProf combines ribosome profiling theory with hands-on wet lab and bioinformatics training 🧪🥼💪🏼
📅 23 – 28 Mar 2025
📍 EMBL Heidelberg
📜 Apply by 21 Nov
👉🏼 s.embl.org/mtd25-01
#ribosomeprofiling #riboprof #riboseq
RiboSeqOrg retweeted
Delighted to see Ribosome Decision Graphs, our novel concept for the representation of translation complexity, published in Genome Research earlier this week.
genome.cshlp.org/content/ear…
Ribo-Seq has unearthed thousands of fascinating cases of translation complexity over the last decade. Through the exploration of Ribo-Seq datasets it became clear that a more accurate representation is required to help us better understand this complexity. #Translation #RiboSeq
One month is left until the registration deadline for EMBO Workshop on Recoding and Diversity of Genetic Decoding: meetings.embo.org/event/24-g… #EMBOrecoding
A novel concept for representation of multiple translated regions in RNA: doi.org/10.1101/2023.11.10.5…
There are thousands of frameshifting sites in ciliate Euplotes and their number continues to grow: pnas.org/doi/10.1073/pnas.22…
The CRT Genomics team is presenting RiboSeg.ORG at EMBO practical course on ribosome profiling @GenomicsCRT #EMBORiboProf @EMBLEvents
Trp-tRNA with a shortened anticodon stem reads UGA codon in an organism with all 64 codons specifying amino acids: nature.com/articles/s41586-0… and nature.com/articles/d41586-0… @NatureNV
Thousands of expressed but unconserved N-terminally extended human proteoforms have been identified with RiboSeqOrg resources: nature.com/articles/s41467-0… @GenomicsCRT @Triasteran @GencodeGenes
The number of known frameshifting cases in human genes is getting smaller: sciencedirect.com/science/ar…
RiboSeqOrg retweeted
About to enter the field of posttranscriptional regulation of gene expression? 👀 Then join #EMBORiboProf, where you will get a detailed theoretical and practical understanding of #ribosomeprofiling
🗺️EMBL Heidelberg
📥Apply by 11 Jan
🗓️26 Mar – 1 Apr
💻s.embl.org/mtd23-01
An international team led by Gencode plans to use ribosome profiling in genome annotations: doi.org/10.1038/s41587-022-0…
RiboSeq reveals thousands of N-terminally extended proteoforms in humans biorxiv.org/content/10.1101/…
Научное сообщество создало постоянно обновляемый список лабораторий (bit.ly/ua-table), которые могут принять украинских ученых (включая аспирантов).