Sara Simmonds 🧬 (@SeSimmonds) header
Sara Simmonds 🧬 (@SeSimmonds) profile picture

Computational Biologist | PhD Biology | Follow for the latest in #compio related to #cellbio #AIxBio

Boston, MA
Joined July 2012
🚨Update to the CZ ID Nanopore metagenomics workflow! Now it detects and automatically concatenates files into one per sample for you!! 🎉 Shout out to @RobAboukhalil for making this happen 🙌 #nanopore #metagenomics czid.org
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Just watched an incredible lecture by @Bioinfodotca on antimicrobial resistance gene (AMR) analysis. Mind-blown by the insights shared! If you're interested in tackling the #AMR challenge, check out the video: youtu.be/FvOCDlcYaTo. #resistome 🧬💪
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💛Puppy 🐶 snuggles💛
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Replying to @nanopore
@nanopore Thank you for putting on an unforgettable conference. Can’t wait until next year. LC 10th!
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LC23: Lara Urban, PI at Helmholtz AI Institute, gave a wide ranging talk on real-time metagenomics of environmental and clinical samples for One Health applications. Vision for accessibility, equity and inclusion for LMICs #NanoporeConf @LaraUrban42
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LC23: Hanlee Ji, Professor at Stanford, talked about tumor single cell short read gene expression paired w/ long read coding to detect pathogenic mutations/rearrangements, CRISPR or base editing with adaptive sampling #NanoporeConf @nanopore @Stanford
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LC23 Day 1: Fantastic talk by Helen Webb, Group Product Manager at Genomics England, about using long read sequencing in cancer patients to detect gene fusions and methylation at promoters (BRCA1, RAD51C) @nanopore @GenomicsEngland #NanoporeConf
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🇬🇧I’ve been working on bioinformatics software for #Nanopore data for a couple years, but it’s my first time at London Calling!! Will be sharing the latest on #bioinformatics #microbiology #metagenomics #singlecell and #genomes🧬 #NanoporeConf
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🦠Learn more about the CZ ID #nanopore #metagenomics pipeline and initial benchmarking results is this video.🦠 youtube.com/watch?v=cpf5jsIH…
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It’s easy to use, free, open-source and well documented. Not to mention the beautiful design🤩
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