@SvenAT

Staff Scientist @10xgenomics. Come for the good looks, stay for the genes. Unfortunately for me, my views are my own

Joined February 2012
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I'm excited to to announce our preprint describing automated cell annotation for human and mouse in @10xGenomics cellranger 9.0+ in collaboration with the @broadinstitute! biorxiv.org/content/10.1101/…

Accelerating scRNA-seq Analysis: Automated cell type annotation using representation learning and...

Cell type annotation in single-cell RNA sequencing (scRNA-seq) experiments is the fundamental step of assigning cell types to individual cells or clusters of cells based on their gene expression...

biorxiv.org
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You can annotate your cells by running Cell Ranger on the 10x Cloud or locally. When you run locally, Cell Ranger will send the expression matrix to 10x Cloud for annotation but none of your data is stored after annotation is performed and returned. 10xgenomics.com/support/soft…

Cell Ranger Command Line Arguments | Official 10x Genomics Support

A set of analysis pipelines that perform sample demultiplexing, barcode processing, single cell 3' and 5' gene counting, V(D)J transcript sequence assembly and annotation, and Feature Barcode...

10xgenomics.com
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We’d love to hear from you - please send feedback on the quality of the annotations or your experience to [email protected].
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Check out this awesome new feature I’ve been working on with the 10x crew!
10x Genomics
@10xGenomics25 Sep 2024
📢 New Feature Alert 🎉 The beta version of Automated Cell Annotation is live in Cloud Analysis! Reduce the burden of manual annotation & visualize cell types instantly to get more accurate #singlecell insights faster. Try it now: bit.ly/3XVOdHe
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Let's start off the New Year with a universal resolution that we'll never send a @SlackHQ message that only contains "Hey", "Hi", or "Hey/Hi person's name".
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Jon
@SpurzForEver1 Jan 2024
Type the year in you were 18 in a gif file see what pops up . 😂😂
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This is an awesome new package that will hopefully make both advanced and novice bioinformaticians happy!
Dylan Webster@DylanPWebster14 Sep 2023
Want to analyze Seurat data without code? Use the new @10xGenomics LoupeR package to move your data into the new Loupe 7. It sports a redesigned UI, and includes new features that put publication-ready figures just a few clicks away! #genomics #singlecell
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The best thing I’ve seen in a long time.
Morgan Bagg@MorganBagg8 Sep 2023
What kind of interview process do the marlins have for their ball boys
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Can confirm. It's unbearable now.
Big Cat
@BarstoolBigCat12 Jun 2023
Did they make the Chipotle hot salsa hotter or am I becoming a wimp?
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Looking forward to summer on the river with the kids
Barstool Sports
@barstoolsports5 Jun 2023
EJECTO SEATO CUZ
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One of my more uncomfortable professional experiences
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Co-workers ordering each other about how to correctly use @SlackHQ is one of my most intense corporate annoyances
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Thanks to @davidchang and @momofuku I now have a chili crunch addiction.
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Let's go!!!
Charles Leno Jr
@charleslenojr7213 Dec 2022
I’ve got a few sets of tickets for the Sunday Night game against the Giants up for grabs. RT if you want to go and I’ll pick some winners tomorrow #WPMOYChallenge Leno #ProBowlVote Charles Leno Jr
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I’ve got a few sets of tickets for the Sunday Night game against the Giants up for grabs. RT if you want to go and I’ll pick some winners tomorrow #WPMOYChallenge Leno #ProBowlVote Charles Leno Jr
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Kids, the solution is roller skating.
Hayden
@the_transit_guy27 Nov 2022
For the rest of my natural life, I will never find a more unhinged ad 💀
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This is awesome!
ESPN
@espn21 Nov 2022
Olivia Pichardo is making HISTORY with @BrownU_Baseball 👏 #ThatsaW
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