Rugby obsessed bioinformagician at the Sydney Precision Data Science Centre at University of Sydney + The Westmead Institute for Medical Research
Sydney, New South Wales
Joined September 2012
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🎓 Postdoctoral Research Fellowship and PhD scholarship (ARC funded)
@shazanfar and I are recruiting a Postdoc and a PhD student to develop new methods for analysing spatial omics data.
Deadlines and position descriptions:
PhD scholarship: 20th of August, lnkd.in/gSHKH7qH
Postdoctoral Research Fellow: 3rd of September, lnkd.in/g59NkfKi
Ellis Patrick retweeted
Exciting opportunity! I am hiring a postdoc to join the group and to develop computational methods for the analysis of biomedical data including imaging and genomics data at a single-cell or spatial resolution 🧬
stephaniehicks.com/join
Ellis Patrick retweeted
I'm looking for a postdoc for my lab - Level A or B, full time or part time considered. Working on single cell transcriptomics and spatial data - methods and collaborative analysis. Really excellent compute available ;)
tinyurl.com/y3e8dfke
Ellis Patrick retweeted
📢📢Reminder that #ABACBS24 abstracts are due midnight tonight and registrations are officially open! Check out the website for details for submitting to all of the week's events (incl. EMCR Hackathon, BioCAsia etc): abacbs.org/conference2024/ho…
The abstract submission date for the ABACBS2024 conference and its satellite events has been extended until the 26th August!
A link to the abstract submission site can be found on abacbs.org/conference2024 . This will provide submission instructions each event.
@abacbs
ABACBS, COMBINE, and SBEI share a submission process while BioCAsia, EMCR Hackathon and workshops have alternate instructions.
@combine_au
@Bioconductor
@abacbspostdocs
Ellis Patrick retweeted
Hello Community! Abstract submission is open
for the @Bioconductor conference #BiocAsia2024 Sydney 7-8 Nov, happening in synergy with the @abacbs conference.
Submit your talk and workshop, join us, and make #BiocAsia2024 wonderful!
biocasia2024.bioconductor.or…
Plz share 🙏
Ellis Patrick retweeted
🎉 Well done to our PhD student @harryrobo for leading a revolution in transplant medicine! 🫀🫁
🔬 This study exemplifies how the integration of global data🌏📈 in precision medicine can benefit individual patients.💡
📖Read more: bit.ly/4cfgVHL
#Bioinformatics #Data
A comprehensive analysis of omics data from biopsies and blood samples from more than 12,000 cases of heart, lung, liver and kidney transplants provides insights into shared mechanisms of #allograft dysfunction across organs @Sydney_Uni
nature.com/articles/s41591-0…
Excited to share our Pan-organ ResOurce for Molecular Allograft Dysfunction (PROMAD)! @theharryrobo did a fantastic job curating data from over 12,000 patient samples across four different transplanted organs. Read on below ->
nature.com/articles/s41591-0…
@NatureMedicine
The study's success is a direct result of the synergy between researchers from various fields and institutions, highlighting the importance of interdisciplinary collaboration in advancing medical science. @sydneybioinfo @WestmeadInst
The work was predominantly enabled by philanthropic funding from the Westpac Foundation. Ultimately, their generosity allowed us to be ambitious with our research aims and demonstrate how data science can benefit medical research and patient care. @WestpacWire
Ellis Patrick retweeted
Next Monday, we're thrilled to have @mritchieau from @WEHI_research as our Judith and David Coffey speaker!
He will present: Systematic comparison of sequencing-based spatial transcriptomic methods with cadasSTre and SpatialBench
⏱️April 22, 1pm (AEST)
👉bit.ly/3DPCCP3
Ellis Patrick retweeted
Two 3yr fixed term positions for applied statisticians @Sydney_Uni 80% of time working on exciting projects with the Charles Perkins Centre (e.g. omics data and global biobank data) and 20% teaching and supervising our amazing students @SydneyMaths usyd.wd3.myworkdayjobs.com/U…
Ellis Patrick retweeted
🧬🤖 Job Opportunity (RT plz)! @bayraktar_lab & I are on the hunt for passionate individuals at the crossroads of Machine Learning & Spatial Biology. Join us for innovative collaborations between labs at @sangerinstitute. Open to various levels: Postdoc/PhD & Predoc. Questions? Reach out! Apply now: sanger.wd3.myworkdayjobs.com…
🔍 For a glimpse into our projects, check out: xitter.cf/mo_lotfollahi/st…
Retweet please for visibility
#MachineLearning #SpatialBiology
1/n: 🔬We introduce NicheCompass (NC) a graph learning model to build spatial atlases across millions of cells, quantitatively characterize cell niches, infer cellular communication, and map new data into these atlases. NC can be used with various spatial technologies, ranging from cellular to subcellular resolution including even multimodal approaches. We have explored interesting biology by analyzing cell niches spanning from development to cancer. Led by @SebastianBirk_ in a fun colab with @cartalop:
paper: tinyurl.com/yht27w8h
Ellis Patrick retweeted
🙌Well done to @theharryrobo for leading a stellar team with Prof Natasha Rogers, Prof Jean Yang and Dr Ellis Patrick to victory at the 2023 @foundrybb competition with his pitch for their startup, "GraftAI". 🏆
Excited to see what's next in the journey ahead!🌟
