@VIAMD_

VIAMD is an interactive analysis tool for MD. Article: https://xitter.cf/t.co/CX544xE7yN. Youtube playlist: https://xitter.cf/t.co/5Ul1MsY7cE

 Sweden
github.com/scanberg/viamd
Joined March 2022
  • Tweets22
  • Following84
  • Followers144
2Media
We are glad to hear that you enjoyed it @MiWieczor
Miłosz Wieczór (@milosz-wieczor.bsky.social)@MiWieczor12 Sep 2024
Slowly concluding the "Learn to Code in Gromacs" workshop, such an intense learning experience getting from a near-complete arse in C++ to having a polished merge request! Huge thanks to @BioExcelCoE and the developers' team for making this happen 🙏
1
6
460
A few years ago, multiconfigurational wave functions were for small molecules. Today we can do proteins! We discuss the latest developments in a new perspective in @PCCP #theochem #compchem See link for the paper: pubs.rsc.org/en/content/arti…

Perspective: multi-configurational methods in bio-inorganic chemistry

Transition metal ions play crucial roles in the structure and function of numerous proteins, contributing to essential biological processes such as catalys

pubs.rsc.org
2
6
270
Join us at the @VisualiseringC for a workshop titled "Computation and Visualization of Large Molecular Systems" on May 27 and 28, 2024. With tutorials from @bradyajohnston, @VIAMD_ and @VeloxChem. Registration: forms.gle/KEg4TCWBQavXt6FWA #compchem

Computation and Visualization of Large Molecular systems

Event Timing: 27-28 of May 2024 Event Address: Visualiseringscenter C, Kungsgatan 54, 602 33 Norrköping, Sweden Contact: Mathieu Linares - [email protected] We welcome you to the workshop titled...

docs.google.com
10
26
3,083
#VIAMD Visualization of a #MD simulation performed with @GMX_TWEET of 1KX5 PDB, Nucleosomal DNA. #compchem
6
44
2,443
Too much fun with molecular dynamics and membranes... Realizing that the fluid mosaic is something to consider... @GMX_TWEET @VIAMD_
4
25
158
10,413
Replying to @fenguita @GMX_TWEET @VIAMD_
Wow…now that’s something to imagine!
1
1
3
411
🤖 So #ChatGPT wrote the first sentence of this @ElsevierConnect article. Any other parts of the article too? How come none of the coauthors, Editor-in-Chief, reviewers, typesetters noticed? How can this happen with regular peer-review? pubpeer.com/publications/CAA…
https://pubpeer.com/publications/CAABBF887348FB2D1C0329E0A27BE6

ALT https://pubpeer.com/publications/CAABBF887348FB2D1C0329E0A27BE6

122
1,079
507
4,400
1,549,667
Did you miss the @BioExcelCoE webinar about @VIAMD_? No worries, you can find it on youtu.be/wVENzcx0XmQ?si=VSZ7… #compchem
11
33
1,614
👉#VIAMD #webinar @BioExcelCoE Tomorrow!
BioExcel CoE
@BioExcelCoE5 Feb 2024
🔜 Join us tomorrow at 15:00 CEST to hear about "VIAMD, a software for visual analysis of Molecular Dynamics" Registration is still open: bit.ly/3H6Fclf @scanberg @matmirulimarrj #webinar #moleculardynamics

Webinar: VIAMD: A Software for Visual Analysis of Molecular Dynamics (2024-02-06)

Visit the post for more.

bioexcel.eu
1
2
452
Want to learn more about VIAMD? Join us tomorrow at 15:00 at the @BioExcelCoE Webinar. Registration is still open: bit.ly/3H6Fclf. #compchem

Webinar: VIAMD: A Software for Visual Analysis of Molecular Dynamics (2024-02-06)

Visit the post for more.

bioexcel.eu
3
6
423
Polarizable AMOEBA Model for Simulating Mg2+·Protein·Nucleotide Complexes #MolecularDynamics pubs.acs.org/doi/10.1021/acs… @nagyrpeter @Varma_TCBgroup #JCIM Vol64 Issue2 #compchem

Polarizable AMOEBA Model for Simulating Mg2+·Protein·Nucleotide Complexes

Abstract. Molecular mechanics (MM) simulations have the potential to provide detailed insights into the mechanisms of enzymes that utilize nucleotides as c

pubs.acs.org
8
27
2,074
#VIAMD is an interactive analysis tool for molecular dynamics (#MD) written in C/C++. The developers of this software made life live! You can try this open-access software through this link: github.com/scanberg/viamd @VIAMD_
3
2
15
1,071
This might be niche #compchem software, but definitely VIAMD by @scanberg, which is a proper open-source replacement for VMD (and much more than that)
Klara Inc.@klarainc12 Jan 2024
What's a 2023 technology of personal discovery of yours that's changed the way you do things?
1
4
261
New @VIAMD_ video available on youtube: youtu.be/VhJyMkgYIkE about dynamic selection and counting. Teaser video below. VIAMD is available on github: github.com/scanberg/viamd/ and doi.org/10.1021/acs.jcim.3c0…. #compchem
15
57
3,326
#compchem
༻Ras⏣uli H༺@H3nRasouli25 Jan 2024
#VIAMD is an interactive analysis tool for molecular dynamics (#MD) written in C/C++. The developers of this software made life live! You can try this open-access software through this link: github.com/scanberg/viamd @VIAMD_
1
3
187
New @VIAMD_ video available about Spatial Distribution Function: youtu.be/BDYQEnrhlBQ?si=KiYX… #compchem
6
21
1,164
New @VIAMD_ video available about Timeline, Distribution, Visual Feedback and Filtering: youtu.be/7bqsg3GFly8?si=-5bR… #compchem

VIAMD - Timeline, Distribution, Visual Feedback and Filtering

VIAMD is a tool for Visual Interactive Analysis of Molecular Dynami...

youtube.com
2
13
503
#compchem. New @VIAMD_ video about Properties, Selection, Import/Export and Workspace: youtu.be/0w8iPYEVeY8?si=7PDe…

VIAMD - Properties, Selection, Import/Export and Workspace

VIAMD is a tool for Visual Interactive Analysis of Molecular Dynami...

youtube.com
2
6
19
1,004
#compchem I started to make tutorial videos for @VIAMD_: The first one is available here youtu.be/7X4pMv1Hf-4?si=95e1… and is just a quick overview of the software. 🧵
4
23
1
65
6,483
New feature available in #VIAMD: coordinate system widget. #compchem VIAMD is available on github: github.com/scanberg/viamd/, article available here: pubs.acs.org/doi/10.1021/acs…
1
3
5
477
You can right-click on the widget to change the position and adjust the size.
118
Load more