Yu Tin Lin retweeted
You can now run Minerva in your browser.
Predict base-pairing, repeats, and other coevolution in seconds: huggingface.co/spaces/gbrixi…
Genomes are full of dark matter of unknown functions.
We present Minerva, a new method for discovery guided by genome language models. Minerva reveals the interactions hidden in non-coding DNA, pointing to hundreds of new putative RNAs and repetitive elements per bacterial genome. Minerva allows us to find and study elements invisible to traditional methods at orders of magnitude greater scale than before.
Yu Tin Lin retweeted
Amazing to see the unstoppable @pentamorfico & @Dennis_J_Zhang duo shape this story alongside @shsternberg + @IsraelF96135088 teams.
Result: unexpected mechanistic + ancient evolutionary links between bacterial DRTs and telomerase! 🎉
check out the phage structure by @samuelhking, @_David_Li, & co, featured in October 2026 Molecule of the Month!
pdb101.rcsb.org/motm/322#:~:…
AI titan Anthropic has launched a biology ‘wet lab’ where human scientists and AI agents will work together to design and conduct experiments. The company has released one of the team’s first finds: a peculiar pattern of DNA in the genomes of several giant viruses.
go.nature.com/46K4qmC
Yu Tin Lin retweeted
If you find our work on ART interesting, see this recent paper from @_David_Li and @garykbrixi in the @BrianHie lab, who are using genomic language models for biological discovery. It's fantastic work and includes their announcement of UG27, another array-associated RT system, which our ART findings complement nicely. biorxiv.org/content/10.64898…
Yu Tin Lin retweeted
Today we announced the Claude-led discovery of a molecular machine that we suspect could represent a new gene editing mechanism. Its precise function, biotechnological utility (if any), or level of significance is not yet clear, but at minimum it is work I would have been proud to do as a PhD student. The work was done mostly, though not entirely, by Claude: our life sciences team suggested a broad area of research, Claude read through the literature and a bunch of genome data and discovered something interesting, then Claude proposed experiments to verify the discovery and our team carried them out.
It’s easy to dismiss this as a one-off or curiosity, but we’ve repeatedly seen a pattern where AI performance in new intellectual domains goes from weak to superhuman in a matter of a few years. In 2023 models struggled to do math at the level of an average high-school student. In 2024 they started to do well on math competitions for the best high-schoolers in the country, in 2025 they started to solve minor open problems, in early 2026 more significant open problems, and in late 2026 they are beginning to solve the top few open problems in all of mathematics. We believe AI for biology is on a similar exponential trend.
The main difference between biology and mathematics, of course, is that math can be done purely theoretically, while biology requires experimentation. Some have used this to draw the conclusion that AI’s utility in biology will be limited. We think this is wrong. As we’ve demonstrated today, humans can collaborate with AI to perform the experiments, validate key results in a few weeks and, if necessary, work with the AI to iterate on what they find. Eventually it may even be possible for Claude itself to safely perform the experiments by autonomously controlling lab equipment, with appropriate safeguards in place, but we aren’t doing that today (our lab is also a BSL1/BSL2 facility that doesn't handle materials dangerous to humans).
More broadly, biomedical advancement has many stages — from fundamental biology discoveries, to translational research, to drug discovery, clinical trials, and finally the actual delivery of medicines and health care to patients. We are also interested in these later stages, but even simply accelerating the first stage of fundamental biological discoveries has the potential to speed up and broaden the entire pipeline. Improving our understanding of biology and sharpening biologists’ tools can drive forward all of the later stages, for example by identifying new drug targets, finding new therapeutic modalities, allowing for more precise measurement, and speeding up the experimental loop which itself further accelerates our understanding of biology. This will not in itself speed up clinical trial times, but if it succeeds it could greatly increase the number of promising candidates that go into the pipeline — an increase in throughput even though latency remains.
In Machines of Loving Grace, I wrote about AI’s potential to “cure most diseases in 5-10 years” — a goal that sounds impossible, but one I believe is just barely possible if AI is applied to every stage of the pipeline. The first step is showing that AI can first help with, and then drive, biological discoveries.
Claude’s discovery is the latest in a line of related prior work that goes back decades, beginning with systems like CRISPR, and continuing with discoveries like the bridge recombinase and VIPR in the past few years. Recently, there has been heightened interest in systems based on reverse transcriptase (RT) enzymes, the enzyme underlying the system Claude identified. And most recently, a Stanford team working independently described a novel RT system with an associated non-coding array that is in some ways similar to the one Claude found, though they are distinct systems that evolved independently from each other. I believe that we’re at the very beginning of finding such systems and developing them into powerful tools for biotechnology.
I’m proud of the resources Anthropic has invested in accelerating the public benefits of AI through the life sciences, and we’re aiming both to grow our life sciences team and to work with other scientists to extend this approach to a broad range of problems. If you have a proposal for a research collaboration or are interested in joining our life sciences team, please reach out.
Claude has discovered a previously unknown enzyme system hidden in the DNA of bacteriophages. Beside the enzyme’s gene sits a long array of repeating DNA—a structure that looks somewhat similar to CRISPR.
We don’t yet understand what this system does, but only a handful of known systems share its features, and all of them are able to cut, copy, and paste DNA. Historically, the discovery of such programmable systems has helped revolutionize medicine. CRISPR, for instance, is now the foundation of genetic medicines. But it will take much more work to learn what this system does, and whether it can be put to similar use.
Read more: anthropic.com/news/claude-di…
Yu Tin Lin retweeted
Genomes are full of dark matter of unknown functions.
We present Minerva, a new method for discovery guided by genome language models. Minerva reveals the interactions hidden in non-coding DNA, pointing to hundreds of new putative RNAs and repetitive elements per bacterial genome. Minerva allows us to find and study elements invisible to traditional methods at orders of magnitude greater scale than before.
Yu Tin Lin retweeted
Excited to share Minerva, our approach using genome language models for biological discovery! Using Minerva, we find that UG27 reverse transcriptase systems encode variable arrays of diverse ncRNAs with a shared structure, each templating a short DNA hairpin. With @garykbrixi.
CRISPR screens are great at telling you what a gene is doing inside your cells. But what if you're interested in what's happening to its neighbors?
Today, I'm excited to share match-seq, a new method that deciphers cell-cell interactions using barcoded RNA transfer.
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Yu Tin Lin retweeted
I am honored to have been selected as one of MIT Technology Review's Innovators Under 35 this year.
🔗ter.li/05p3ttfg
🔗technologyreview.com/superto…
This recognition is shared with the many amazing people I get to work with everyday as a @bioe_stanford PhD student and at @arcinstitute. Doing research alongside my brilliant labmates and advisor @BrianHie has been the best part of my PhD, and the science is truly a product of that.
My research has been driven by the insight that biology operates on design principles that can be leveraged to transform medicine, sustainability, materials, and beyond, and that computational modeling, including AI, will help us decipher those design principles at scale. Nature's innovations are written in genomes, and we have a long way to go in understanding them. You can read more about some of our efforts developing AI to understand and design genomes in my comment below.
Thank you to everyone at the @techreview and all the judges for organizing this, especially @AmyNordrum and @antonioregalado, for your support. I can't wait to see all the incredible things the other Innovators do!
Yu Tin Lin retweeted
Excited to share our work on a model for mapping molecules to olfactory receptors to perception, out today! Check out the link in thread ⬇️
Out today in Cell Systems: the final version of our work on biologically-inspired models for predicting how molecules smell!
With @SeyoneC and @jdthamores
Our paper with @eternagame, 5 AI teams, and cryo-EM collabs on de novo design of #RNA pseudoknots with #deeplearning is out in @ScienceMagazine ! Comes with a provocative commentary on RNA structure prediction by @TonyMustoe lab! doi.org/10.1126/science.aeg6… doi.org/10.1126/science.aek4…
Yu Tin Lin retweeted
Today in @ScienceMagazine, we report the first functional AI-generated genomes. 🧵
science.org/doi/10.1126/scie…
Yu Tin Lin retweeted
We’re so excited to share our new paper, where we tackle the wealth of structural and functional diversity of anti-phage sensors across bacteria (1/6)
Nature research paper: Diverse bacterial pattern recognition receptors sense the core phage proteome
go.nature.com/4w2kf25
RNA flexible? Maybe we can model that. First blind test of RNA 3D *ensemble* prediction — ligand-free SAMURI ribozyme (displayed on a group II intron scaffold) -- #MD and #deeplearning methods welcome, deadline Aug 22, 2026:
predictioncenter.org/casp17/…
Come build with Akira & co!!
At @gxl_ai, we're excited to announce re:AGENT a two-day build weekend (8/15–8/16, SF) for people building tools for scientific agents. We have three tracks: build an AI scientist, create a large-scale scientific dataset or meta-analysis, or design a new biological system.
Apply by 7/30 at luma.com/g6org075
Thanks to our partners at @arcinstitute, @AnthropicAI, @benchflow_ai, future.bio, and @biohub!
Yu Tin Lin retweeted
A laser phase plate improves structure determination of small proteins by cryo-EM, according to a new study in Science.
Learn more: scim.ag/4vKcUEw
Yu Tin Lin retweeted
Meet the 2026 cohort of KH scholars! These 87 new scholars make up the most global Knight-Hennessy Scholars cohort to date, and will pursue degrees in 45 graduate programs across all seven graduate schools at @Stanford: knight-hennessy.stanford.edu… (1/2)
Yu Tin Lin retweeted
AlphaFold-based models like Boltz-2 and BioEmu train on atomic conformational structures in order to predict protein dynamics. But is it possible to train these models directly on cryo-EM map ensembles, harnessing conformational data that is typically not deposited in the PDB?
Introducing CryoSampler: a new approach for fine-tuning Boltz-2 with raw supervision on cryo-EM map ensembles.
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