Aaron T. Frank (@aFrankLab) profile picture

Aaron T. Frank

@aFrankLab

Computational biophysicist

 Michigan, USA
Joined October 2014
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  • Followers347
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Photo by Aaron T. Frank (@aFrankLab)Photo by Aaron T. Frank (@aFrankLab)Photo by Aaron T. Frank (@aFrankLab)Photo by Aaron T. Frank (@aFrankLab)Photo by Aaron T. Frank (@aFrankLab)
We're looking everywhere for co-ops to jump right in and become integral members of our team, driven by curiosity and the freedom to explore. We strive to make Arrakis an inclusive place where everyone can thrive. Learn more and join us! #DareToBeArrakeen arrakistx.com/careers/curren…
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I'm leading an exciting internship project at OpenEye in summer 2022! There are lots of opportunities for undergrad and grad students, check it out: linkedin.com/jobs/view/29128…

Sojourner Center Jobs in United States (11,000+ Open Roles) | LinkedIn

Today’s top 11,000+ Sojourner Center jobs in United States. Leverage your professional network, and get hired. New Sojourner Center jobs added daily.

linkedin.com
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Learn a language with me for free! Duolingo is fun, and proven to work. Here’s my invite link: invite.duolingo.com/BDHTZTB5…
Image from Aaron T. Frank (@aFrankLab)
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One reason not to leave your kid alone with your device…but he sure is proud of his language-learning streak.
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.@LoganSAhlstrom (Director of Data Science Labs .@CharlesSchwab) is hiring for his team and this is an opportunity that you won't want to miss! Position is tenable in: US-TX-Austin US-MI-Ann Arbor US-TX-Westlake US-IL-Chicago US-CA-San Francisco career-schwab.icims.com/jobs…
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Pleased to share our new publication, "Investigation of the pKa of the Nucleophilic O2′ of the Hairpin Ribozyme" in press at J Phys Chem B. Image is the cover prepared by first author Drew Veenis. pubs.acs.org/doi/full/10.102…
Image from BevilacquaLab (@phil_bevilacqua)
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Aaron T. Frank retweeted
Alex Dickson (@dicksonlab) profile picture
Alex Dickson@dicksonlab28 Sep 2021
Happy to announce our collaborative paper with @Roivant sciences is up on bioRxiv! In it we use wepy and REVO weighted ensemble sampling to simulate PROTAC ternary complex formation. But there's so much more here too! biorxiv.org/content/10.1101/…
Atomic-Resolution Prediction of Degrader-mediated Ternary Complex Structures by Combining Molecular...

Atomic-Resolution Prediction of Degrader-mediated Ternary Complex Structures by Combining Molecular...

Targeted protein degradation (TPD) has recently emerged as a powerful approach for removing (rather than inhibiting) proteins implicated in diseases. A key step in TPD is the formation of an induced...

biorxiv.org
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Aaron T. Frank retweeted
Alex Dickson (@dicksonlab) profile picture
Alex Dickson@dicksonlab16 Sep 2021
Our lab is hiring postdoc(s) again! Come work with us to build and apply the next generation of tools for computational drug discovery! Dynamics, property prediction, PK modeling, and crazy new virtual screening methods. Come and be a part of it! careers.msu.edu/cw/en-us/job…
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Probabilistic Modeling of RNA Ensembles Using NMR Chemical Shifts pubs.acs.org/doi/10.1021/acs…
Image from Aaron T. Frank (@aFrankLab)
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Das Lab (@RDasLab) profile picture
Das Lab@RDasLab26 Aug 2021
Out today in @ScienceMagazine - our work in collaboration with @DrorLab on ARES: a geometric deep learning algorithm that can identify accurate 3D RNA structures: science.sciencemag.org/conte…. Congrats to lead authors @raphaeljlt @amw_stanford and Stephan Eismann!
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Dhiman Ray (@DhimanRay16) profile picture
Dhiman Ray@DhimanRay1621 Aug 2021
Excited to present our work from @UCIChemistry at #ACSFall2021 @ACSCOMP @AmerChemSociety : "Probing the Dynamical Couplings in the SARS-CoV-2 Spike Protein Using Unsupervised Learning and Protein Graph Connectivity Network". Tue 24 Aug @ 8.15 pm EDT, Zoom Room 11 #compchem (1/3)
Image from Dhiman Ray (@DhimanRay16)
Image from Dhiman Ray (@DhimanRay16)
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Patrick Walters (@wpwalters) profile picture
Patrick Walters@wpwalters17 Aug 2021
An Introduction to Cheminformatics, Data Analysis, and Machine Learning August 19, 2021 - 10AM EST A hands-on workshop on building and validating ML models rsc.org/events/detail/47411/…
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Dhiman Ray (@DhimanRay16) profile picture
Dhiman Ray@DhimanRay1617 Aug 2021
(1) Our new pre-print from Andricioaei group @UCIChemistry with our undergraduate researcher, Riley. We explored the dynamical perturbation in the antigen-antibody complex due to the mutations in the SARS-CoV-2 spike RBD. #compchem #SARSCoV2 biorxiv.org/content/10.1101/…
Image from Dhiman Ray (@DhimanRay16)
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Dhiman Ray (@DhimanRay16) profile picture
Dhiman Ray@DhimanRay164 Aug 2021
Please RT. I and @chem_christian are jointly organizing a @BiophysicalSoc sponsored virtual networking event, on Computational Methods for Biomolecular Kinetics, on Sept 1, 2021, 8-10 am PDT. Registration is free and BPS membership not required. Link: biophysics.org/upcoming-netw… 1/4
Image from Dhiman Ray (@DhimanRay16)
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Quantum Mechanics Helps Uncover Atypical Recognition Features in the Flavin Mononucleotide Riboswitch pubs.acs.org/doi/10.1021/acs…
Quantum Mechanics Helps Uncover Atypical Recognition Features in the Flavin Mononucleotide Ribosw...

Quantum Mechanics Helps Uncover Atypical Recognition Features in the Flavin Mononucleotide Ribosw...

Abstract. Estimating the binding energies of small molecules to RNA could help uncover their molecular recognition characteristics and be used to rationall

pubs.acs.org
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New interesting work from DeepMind.
Olaf Ronneberger (@ORonneberger) profile pictureOlaf Ronneberger@ORonneberger29 Jun 2021
Proteins are not static bricks! Feasibility study to infer a continuous distribution of all states using an end-to-end model from Cryo-EM images to atom coordinates: arxiv.org/abs/2106.14108. @danrsm, @GarneloMarta, @MichaelZielins, @JonasAAdler, @arkitus, @CarlDoersch, @pushmeet
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Dhiman Ray (@DhimanRay16) profile picture
Dhiman Ray@DhimanRay1628 Jun 2021
Our new pre-print from Andricioaei group @UCIChemistry (in collaboration with talented undergrad Sharon). We introduce the Markovian Weighted Ensemble Milestoning (M-WEM) approach which combines Weighted Ensemble with the Markovian Milestoning: doi.org/10.1101/2021.06.26.4… (1/4)
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Titr-DMD—A Rapid, Coarse-Grained Quasi-All-Atom Constant pH Molecular Dynamics Framework pubs.acs.org/doi/10.1021/acs…
Titr-DMDA Rapid, Coarse-Grained Quasi-All-Atom Constant pH Molecular Dynamics Framework

Titr-DMDA Rapid, Coarse-Grained Quasi-All-Atom Constant pH Molecular Dynamics Framework

Abstract. The pH-dependence of enzyme fold stability and catalytic activity is a fundamentally dynamic, structural property which is difficult to study. Th

pubs.acs.org
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Mining for Ligandable Cavities in RNA pubs.acs.org/doi/10.1021/acs…
Image from Aaron T. Frank (@aFrankLab)
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If you want to have a look inside SARS-CoV-2 🔎🦠🧬, check out the new paper w @SSadnro @BussiGio studying the structural dynamics on a set of non-coding elements in the 5' UTR of the RNA genome. Now out in @J_A_C_S doi.org/10.1021/jacs.1c01094. Or have a look the video Sandro made👇
Image from Kresten Lindorff-Larsen (@LindorffLarsen)
Sandro Bottaro (@SSadnro) profile pictureSandro Bottaro@SSadnro27 May 2021
Happy to (re) share our work on SARS-CoV-2 pubs.acs.org/doi/full/10.102…
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