@cerebis1
Joined January 2010
  • Tweets42
  • Following234
  • Followers72
1Media
Article at @PLOSCompBiol coauthored with @koadman finally hit the streets. QC your Hi-C sequencing data without (or with) a reference genome. journals.plos.org/ploscompbi… #HiCsequencing #NGS #metagenomics #bioinformatics

qc3C: Reference-free quality control for Hi-C sequencing data

Author summary The Hi-C sequencing technique offers the potential for significant scientific insight about the spatial arrangement of DNA, however achieving such outcomes is highly dependent on the...

journals.plos.org
1
2
7
We all know that bloke...
844
5,103
1,231
14,959
Matthew DeMaere retweeted
Jake Tapper 🦅
@jaketapper13 Mar 2020
Nov 8 2013
Donald J. Trump
@realDonaldTrump8 Nov 2013
Leadership: Whatever happens, you're responsible. If it doesn't happen, you're responsible.
779
10,279
591
44,552
Matthew DeMaere retweeted
Kevin Calia@kacalia14 Mar 2020
Replying to @NickKristof
There must be a lot of dentists in Seattle who have gloves. Cancel dental appointments and give gloves to hospitals.
32
108
13
1,267
Matthew DeMaere retweeted
Bit Bro@Fudamentals14 Mar 2020
Replying to @NickKristof
Yep. Brace for impact.
40
360
51
1,272
New preprint: Sim3C: Simulation Of HiC And Meta3C Proximity Ligation Sequencing Technologies biorxiv.org/content/early/20… @koadman
5
3
Possible side-effect of fixed seed for rand gen, while at least Bowtie[2] re-inits this every read. tinyurl.com/z57dssk

Verification and validation of bioinformatics software without a gold standard: a case study of BWA...

BMC Bioinformatics - Bioinformatics software quality assurance is essential in genomic medicine. Systematic verification and validation of bioinformatics software is difficult because it is often...

link.springer.com
Published an article today @koadman @thePeerJ peerj.com/articles/2676 #Bioinformatics #ComputationalBiology #Genomics #Microbiology #HiC

Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms...

Background Chromosome conformation capture, coupled with high throughput DNA sequencing in protocols like Hi-C and 3C-seq, has been proposed as a viable means of generating data to resolve the...

peerj.com
1
1
Matthew DeMaere retweeted
Jason Gay@jasongay4 Sep 2016
genius idea alert: @vanmoof bikes had problem with shipping damage. So it put flat TVs on its boxes. Problem solved.
17
822
171
996
Dylan Voller has instructed us to release this letter:
103
767
114
900
Metagenomic 3C hard and soft clustering peerj.com/preprints/1974/?td…

Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms...

Background. Chromosome conformation capture, coupled with high throughput DNA sequencing in protocols like Hi-C and 3C-seq, has been proposed as viable means to generate data to resolve the genomes...

peerj.com
4
4
No win but great ride by all of @Etixx_QuickStep at PR. @tonymartin85 and @tomboonen1 class and effort. xitter.cf/Etixx_QuickStep/status…
Soudal Quick-Step Pro Cycling Team
@soudalquickstep11 Apr 2016
#ICYMI Report, reactions and riders' update after #ParisRoubaix: etixx-quickstep.com/en/news/… Photo: @TDWsport
CNN maybe keep your polls up, even if you're unhappy with the outcome? @JustThatGuyBen @CNNPolitics @CNN @BernieSanders
Matthew DeMaere retweeted
Matthew Keenan@mwkeenan1 Sep 2015
To support the @bicycle_network membership drive I became a cartoon character. VIDEO: youtube.com/watch?v=flf_O-0i…
2
13
20
Matthew DeMaere retweeted
The Age
@theage31 Mar 2015
Secret report finds Essendon's drugs record-keeping was 'deplorable' theage.com.au/afl/afl-news/s…

Secret report finds Essendon's drugs record-keeping was 'deplorable'

The AFL anti-doping tribunal that cleared 34 Essendon players was highly critical of the club's conduct in 2012, describing its supplements program record-keeping as "deplorable."

theage.com.au
12
16
14
Sorry @CyclingNSW but new event calendar is terrible. Filters very buggy. Plz fix? Might be handy if it worked well. Lots of devs around.
My sister enjoying her babycino.
Matthew DeMaere retweeted
Cycling NSW@CyclingNSW11 Jun 2012
Cervelo Masters Rd1 will be re-scheduled, decision made not long ago. Pls spread the word to people who may be traveling to the event.
7
#biblio cafe at #UNSW. Worst coffee I've had in ages and I'm not picky. Why have an espresso machine if you only employ sandwich-hands.
#LadyGaga #Manchester concert goers complain bloody show wasn't for appropriate children... duh. Why take their kids in first place? :)
Load more