@chunleiwu

Professor @scrippsresearch - Bioinformatics, Data science, Crowd-sourcing, Genomics - Building @biogps @mygeneinfo @myvariantinfo @biothingsapi

wulab.io
Joined August 2010
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We’re excited to be officially included in the #NIAID Data Ecosystem Discovery Portal, a hub for accessing #FAIRData from over 50 sources related to infectious and immune-mediated diseases. data.niaid.nih.gov/
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Ready to get started with #BOSC AT #ISMB2024 !
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Scripps Research scientists @flaneuseks @andrewsu @chunleiwu have partnered with @NIAIDBioIT to launch the NIAID Data Ecosystem Discovery Portal - a searchable interface of infectious & immune-mediated datasets
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Jackson from @biothingapi team presenting BioThings Explorer, explorer.biothings.io, as a way to integrate distributed knowledge #APIs with lower developer burden #BOSC2023 #ISMBECCB2023
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How scalable it is? Q2 from the audience: BioThings Explorer does not hold any data locally, only keeps #MetaKG, semantic annotations of #API, in the memory, so scalability is one of its highlighted features.
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Do you have a #UI for non-computational researchers? Q3 from the audiences: It's still a tool for bioinformatician at its current stage, but web #UI is on our Todo list. Altly, Biomedical Translator project is building a dedicated UI for querying knowledge #API, including ours.
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Chunlei Wu retweeted
BOSC@OBF_BOSC25 Jul 2023
Another great talk at #BOSC2023!
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J Harry Caulfield now talking about transforming unstructured biomedical texts with LLMs. Using these to translate this unstructured data ti knowledge schemas. #BOSC2023 #ISMBECCB2023 – at Lyon, France
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The first keynote for #BOSC2023 by Dr. Sara El-Gebali (@yalahowy) titled “A New Odyssey: Pioneering the future of scientific progress through open collaboration”
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Outbreak.info Research Library collects and integrates COVID-19 information from various repositories, enabling 1-stop search for publications, clinical trials, datasets and other sources. nature.com/articles/s41592-0… @GTsueng @flaneuseks @K_G_Andersen @andrewsu @chunleiwu
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Now you can easily find sets of genes involved in #GeneOntology processes, diseases and more with our new @mygenesetinfo API. Try it out at mygeneset.info

My Geneset

A website and API to collect, save, and share genes

mygeneset.info
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Our latest #Biomedical #API member of the @biothingsapi family! Public annotated genesets➕ user submitted genesets➕anonymous genesets
mygenesetinfo@mygenesetinfo21 Nov 2022
Soft launch of our brand-new MyGeneset.info, a web toolset for sharing functional gene sets in all species with programmatic #API access. A joint work of @vincerubinetti @ravila_4 & the @biothingsapi team of @GreeneScientist & @chunleiwu labs!

My Geneset

A website and API to collect, save, and share genes

mygeneset.info
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New BioThings SDK #pypi package released with support for #python 3.9, 3.10 and a lot of other improvements! pypi.org/project/biothings/

biothings

a toolkit for building high-performance data & knowledge APIs in biology

pypi.org
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NIH launched the Long COVID Computational Challenge (L3C) which will award up to $500k in support of data-driven AI/ML solutions that help us understand the risks of developing the condition. #NIHData #DataScience imagwiki.nibib.nih.gov/index…
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We collaborated with @gisaid to enable access to all genomic data on outbreak.info via R package outbreak-info.github.io/R-ou… This allows researchers to access #SARSCoV2 variant data from outbreak.info to support their own analyses. #openscience
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Congrats @ScrippsGradPrgm @ScrippsResearch for being, once again, ranked among the top ten in the nation, according to the U.S. News & World Report’s survey. We are the only non-university-based program included on the list. Another great reason to join our faculty!
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Just announced! @NIHdatascience is making it easier for researchers to share and reuse NIH-funded research data. Learn about our new initiative: datascience.nih.gov/news/nih… #NIHdata #researchers #FAIRData #OpenData #OpenScience
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Chunlei Wu retweeted
Andrew Su@andrewsu7 Dec 2021
Would love to see more candidates in bioinformatics and computational biology! @iscb
Andrew Su@andrewsu7 Dec 2021
Replying to @andrewsu
More info at scripps.edu/fellows-program/
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Want to build your own biomedical data API like @mygeneinfo? Read about the BioThings SDK in our new #preprint on #biorxiv_bioinfo. #FAIRdata biorxiv.org/content/10.1101/…

BioThings SDK: a toolkit for building high-performance data APIs in biomedical research

Summary To meet the increased need of making biomedical resources more accessible and reusable, Web APIs or web services have become a common way to disseminate knowledge sources. The BioThings APIs...

biorxiv.org
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