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Pathobiome

@gr_pathobiome

We’re a group of scientists that investigate on ecological and evolutionary aspects of the microbial communities associated with pathogens and hosts @INRA_Intl

 France
Joined October 2015
  • Tweets4.2K
  • Following161
  • Followers868
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Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics frontiersin.org/articles/10.…
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I'm thinking about proposing a computational/data science workshop for next year's #asmmicrobe in Chicago. What (skills) would you like to learn? or wish you had learned sooner?
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Philosophy & science day tweet 1: What is An Organism? An Immunological Answer (by Thomas @pradeu ) jstor.org/stable/23335074?se…

What is An Organism? An Immunological Answer | JSTOR

Thomas Pradeu, What is An Organism? An Immunological Answer, History and Philosophy of the Life Sciences, Vol. 32, No. 2/3, 2010, The Concept of Organism: Historical, Philosophical, Scientific...

jstor.org
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Highlighting the recent microbiome research. microbiomedigest.com/2019/07… via @microbiomdigest
July 6, 2019

July 6, 2019

Today’s microbiome digest featuring a variety of research and review articles highlighting the role of gut microbiota-derived signals to the beta cells are necessary for proper insulin trafficking,…

microbiomedigest.com
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What is there in acorns? A lot of #fungi! Our new preprint showing maternal effects in #seed #microbiome of oak trees is online biorxiv.org/cgi/content/shor… @TaniaFort1 @SDelzon @AmyZanne @charlie_pvrt @Ubiogeco @IRHS_Seed_lab
Image from Corinne Vacher (@Corinne_Vacher)
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Can mathematics help us understand the complexity of our microbiome? phys.org/news/2019-07-mathem…
Can mathematics help us understand the complexity of our microbiome?

Can mathematics help us understand the complexity of our microbiome?

How do the communities of microbes living in our gastrointestinal systems affect our health? Carnegie's Will Ludington was part of a team that helped answer this question.

phys.org
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Un beau portrait de notre @fmartin1954 dans @lemondefr aujourd'hui : lemonde.fr/sciences/article/… via @lemondefr
Francis Martin, témoin du mariage de l’arbre et du champignon

Francis Martin, témoin du mariage de l’arbre et du champignon

Ce microbiologiste a découvert le secret qui les unit et propulsé son laboratoire nancéen dans l’arène des grands réseaux internationaux de recherche sur la forêt.

lemonde.fr
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This week marks the end of an era for me. In 2014 @joshdneufeld welcomed me into his microbial ecology lab for an undergraduate coop. Since then this delinquent duo published five papers together- here's the final one: microbiomejournal.biomedcent…
The skin microbiome of vertebrates

The skin microbiome of vertebrates

Microbiome - The skin constitutes the primary physical barrier between vertebrates and their external environment. Characterization of skin microorganisms is essential for understanding how a host...

link.springer.com
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Good to know: Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary | BioTechniques future-science.com/doi/full/…
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After Integrative Human Microbiome Project, what’s next for the #microbiome community? Latest phase of this project has provided many insights into disease. But multidisciplinary collaborations now needed to convert knowledge into clinical applications. nature.com/articles/d41586-0…
Image from MicrobesInfect (@MicrobesInfect)
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. #Microbes : 15e édition du congrès national de la Société Française de #Microbiologie (SFM), du 30 septembre au 2 octobre 2019, Paris. alphavisa.com/sfm/2019/fr/
Image from INRAE Santé Animale (@INRAE_DPT_SA)
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Microbial networks inferred from metabarcoding data lack replicability: consequences for next-generation biomonitoring dlvr.it/R53Md1
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The pros, cons, and many unknowns of probiotics nature.com/articles/s41591-0…
Image from Elisabeth Bik (@MicrobiomDigest)
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Announced at #Holobiont2, #Holobiont3 will take place in Lyon along with the ⁦@IntlSymbioSoc⁩ 10th meeting! See you all there for what will be a memorable conference.
Image from Holobiont/Hologenome (@Hologenomes)
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Microbial “gardening” by a seaweed #holobiont: Surface metabolites attract protective and deter pathogenic epibacterial settlement besjournals.onlinelibrary.wi…
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Sujet de thèse à l'ED227 sur l'Adaptation du microbiote intestinal aux changements de mode de vie des populations humaines. Si vous voulez bien le diffuser à vos étudiants. apps.mnhn.fr/DepotSujetThese… Fin des candidatures le 03/06/2019 !
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La métagénomique est l’étude de l’ensemble des génomes d’un écosystème donné. Elle permet de mieux comprendre les relations entre les différentes populations microbiennes #laMethSci
Image from La Science, CQFD (@ScienceCQFD)
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High-throughput isolation and culture of human gut bacteria with droplet microfluidics biorxiv.org/cgi/content/shor… #bioRxiv
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Quorum sensing between bacterial species on the skin protects against epidermal injury in atopic dermatitis @ScienceTM stm.sciencemag.org/content/1…
Image from Nature Reviews Microbiology (@NatureRevMicro)
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WOW! I just stumbled across a paper that used my #metagenomics tools list (now at my blog buff.ly/2DSYHOk) for large metaanalysis /benchmarking. COOL! Thanks @ppgardne the acknowledgement! Happy all that work was put to good use! 😉👍🦠🧬 @thePeerJ buff.ly/2DXQng5
Image from Jonathan Jacobs 🧬🦠🕹️🏕️ (@bioinformer)
Image from Jonathan Jacobs 🧬🦠🕹️🏕️ (@bioinformer)
Image from Jonathan Jacobs 🧬🦠🕹️🏕️ (@bioinformer)
Image from Jonathan Jacobs 🧬🦠🕹️🏕️ (@bioinformer)
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The temporal dynamics and infectiousness of subpatent Plasmodium falciparum infections in relation to parasite density. dlvr.it/R49PTL

The temporal dynamics and infectiousness of subpatent Plasmodium falciparum infections in relation...

Malaria infections occurring below the limit of detection of standard diagnostics are common in all endemic settings. However, key questions remain surrounding their contribution to sustaining...

pubmed.ncbi.nlm.nih.gov
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