Daehwan Kim (@infphilo) profile picture

Daehwan Kim

@infphilo

Michael L. Rosenberg Assistant Professor at UT Southwestern

 Dallas, TX
kim-lab.org
Joined December 2014
  • Tweets107
  • Following108
  • Followers308
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Photo by Daehwan Kim (@infphilo)
A true graph-based genome aligner: HISAT2 and HISAT-Genotype. Align to the genome+12 million SNPs with amazing speed and accuracy, using a graph FM index. This is a technical tour-de-force from @infphilo nature.com/articles/s41587-0…
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UTSW's inaugural #UHackMed is underway. Learn more about the two-day event hosted by the Lyda Hill Department of #Bioinformatics u-hackmed.org/
Venkat Malladi (@katatonikkat) profile pictureVenkat Malladi@katatonikkat9 Nov 2018
#uhackmed
Image from Venkat Malladi (@katatonikkat)
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Daehwan Kim retweeted
John Pace (@pacejohn) profile picture
John Pace@pacejohn9 Nov 2018
Team 8 - working on cancer problems. #uhackmed @MarkIIISystems
Image from John Pace (@pacejohn)
Image from John Pace (@pacejohn)
Image from John Pace (@pacejohn)
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Bioinformatics dept. at UT Southwestern is hiring tenure-track faculty. Please apply! jobs.sciencecareers.org/job/…
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Our new paper just went up on bioRxiv, describing a comprehensive human gene database that we've been working on for more than 2 years now @elapertea biorxiv.org/content/early/20…
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Looking for a postdoc to develop computational methods for analyzing sequencing data - please find me at #bog18 to discuss it. kim-lab.org/open-positions/
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Just out on @bioRxiv HISAT-genotype and HISAT2: graph-based alignment to the human genome with millions of SNPs integrated, PLUS a new genotyping platform for HLA typing and more biorxiv.org/content/early/20… @infphilo @BenLangmead
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Wake up people: using outdated scientific software is not OK the-scientist.com/?articles.… with comments from @lpachter
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ccb.jhu.edu/software/kraken/ Kraken 1.0 for #metagenomics analysis just released. Thanks @DerrickEWood and Jennifer Lu!
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Daehwan Kim retweeted
Steve Mount (@ongenetics) profile picture
Steve Mount
@ongenetics12 Oct 2017
A tenure-track faculty position in Cell Biology and Molecular Genetics at the University of Maryland. Great place! ejobs.umd.edu/postings/53971
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Looking for postdocs to join Kim lab kim-lab.org working on graph alignment, HISAT3, and other projects. kim-lab.org/open-positions
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LabWorm (@TheLabWorm) profile picture
LabWorm@TheLabWorm4 May 2017
Featured this week: HISAT2, for mapping next-generation sequencing reads to human genomes. Like it? Vote it up! LabWorm.com/Discover
Image from LabWorm (@TheLabWorm)
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Pavian, cool interactive visualization platform for analyzing metagenomic data developed by my officemate @fbreitw biorxiv.org/content/early/20…
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Welcome to Hopkins Ruibang Luo! Delighted to have another genome assembly expert among our ranks teapawt.org/aquaskyline/status/776…
Ruibang Laurent Luo (@aquaskyline) profile pictureRuibang Laurent Luo@aquaskyline16 Sep 2016
Now I'm a Postdoctoral Fellow at Johns Hopkins for @StevenSalzberg1 and @mike_schatz
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rdcu.be/jIAq See our newly published protocol on how to do RNA-seq analysis with StringTie and HISAT, faster and better than ever
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Our new tuxedo protocol just came out (HISAT-StringTie-Ballgown)!! nature.com/nprot/journal/v11… @StevenSalzberg1 @elapertea @jtleek
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Daehwan Kim retweeted
Li Song (@mourisl) profile picture
Li Song@mourisl29 Jul 2016
CLASS v2.1.5 . Fixed small issues, i.e. the wrong predicted transcripts due to rare reads that are than other reads. sourceforge.net/projects/spl…
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Our latest "Mash: fast genome and metagenome distance estimation using MinHash" now published in @GenomeBiology genomebiology.biomedcentral.…
Mash: fast genome and metagenome distance estimation using MinHash

Mash: fast genome and metagenome distance estimation using MinHash

Genome Biology - Mash extends the MinHash dimensionality-reduction technique to include a pairwise mutation distance and P value significance test, enabling the efficient clustering and search of...

link.springer.com
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Daehwan Kim retweeted
Chris Mason (@mason_lab) profile picture
Chris Mason
@mason_lab25 May 2016
Centrifuge: Rapid and sensitive classification of metagenomic sequences biorxiv.org/content/early/20…. All of NCBI NR DB indexed in 69 GB.
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Daehwan Kim retweeted
Stephen Turner (@strnr) profile picture
Stephen Turner@strnr24 May 2016
Centrifuge: this week's rapid/sensitive metagenomics classifier biorxiv.org/content/early/20…
Image from Stephen Turner (@strnr)
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