@intermineorg

Open source data warehouse system for the integration and analysis of biological data. From the Micklem lab at the @GeneticsCam

 Cambridge, UK
intermine.org
Joined April 2012
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  • Followers774
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This paper describes the @intermineorg take on building a Data Warehouse for the Human Genome. You won't be disappointed(!): HumanMine: advanced data searching, analysis and cross-species comparison biorxiv.org/content/10.1101/…

HumanMine: advanced data searching, analysis and cross-species comparison

HumanMine ([www.humanmine.org][1]) is an integrated database of human genomics and proteomics data that provides a powerful interface to support sophisticated exploration and analysis of data...

biorxiv.org
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InterMine retweeted
Wayne@Fomightez20 Apr 2022
Replying to @jomcinerney
Intermine (@intermineorg) offers an API for querying their 'mines' for several model organisms like human, mouse, fly, thale, and yeast see intermine.org/training-porta… and training.cam.ac.uk/bioinform… to get an idea
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Delighted to be one of the DARE UK @UKRI @HDR_UK Sprint Exemplars: building federated AI approaches & IG models for child mental health with @intermineorg @bitfount @AFNCCF @KaleidoscopeIG @AIMESHealth @Tamsin_J_Ford @psychiatry_ucam bit.ly/3fh79Jh
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Do you know @intermineorg? It's an #OpenSource biological #data warehouse. Thanks to @NikhilVats_ it now features an option to download the Frictionless #DataPackage along with the results of any query. Read more: frictionlessdata.io/blog/202… #FrictionlessData #OpenData #BioData

Frictionless Data Package for InterMine

This blog is part of a series showcasing projects developed during the 2020 Tool Fund.

frictionlessdata.io
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Follow our #ELIXIRRIRs: @3DBIONOTES @BridgeDbProject @DisGeNET (RDF API) @FAIRsharing_org @fairtracks @IdentifiersOrg @intermineorg @isatools @molgenis @OmicsDI @plaza_genomics #BioImageInformaticsIndex #gprofiler #OntologyLookUpService @emblebi
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InterMine retweeted
Adrián@adrianbzg16 Sep 2021
I'm delighted to share our latest work published in Nature Sci. Reps (nature.com/articles/s41598-0…). In this paper we propose a deep learning-based system (Polyglotter), that in a general way supports the mapping of natural language searches to database queries. [1/5]

Translating synthetic natural language to database queries with a polyglot deep learning framework

Scientific Reports - Translating synthetic natural language to database queries with a polyglot deep learning framework

nature.com
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ELIXIREurope: NEWS Schema.org releases a new version with ❺ @BioSchemas types for representing life sciences data A big step towards improving #findability of life sciences web resources @SSirarat @egonwillighagen @gray_alasdair #FAIRdata #…
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You can try the feature using any of the links given below - 1. bluegenes-alpha.apps.intermi… 2. alpha.flymine.org/alpha/temp… Please provide your feedback here - forms.gle/qh9m4fDZGJo1q5JB7. It will help us to improve the feature. Estimated time ~ 2 mins Docs - github.com/intermine/im-docs… (3/n)
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I'd like to thank @intermineorg team and @lilscientista for helping me throughout this project. Thanks, @yoyehudi and Sarthak Sehgal for this amazing opportunity. ❤️ (n/n)
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LIS has a new @intermineorg! JointvetchMine Aeschynomene evenia (jointvetch) is a model for study of an unusual form of nodulation, forming nodules on both stems and roots with photosynthetic Bradyrhizobia. The annotated genome paper: doi.org/10.1038/s41467-021-2…
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LegumeInfo.org has a new publication showing some of the new & updated tools available: -Data Store & DSCensor -GCV for pan-genome exploration -Multiple Mines @intermineorg -GCViT for comparing genetic variants -ZZBrowse for GWAS exploration onlinelibrary.wiley.com/doi/…
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Replying to @mattmight
Human mine by @intermineorg is good. Use the list upload function. humanmine.org/humanmine/begi…
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Please RT: Outreachy is seeking mentoring communities for our May to August 2021 internship round. We especially invite humanitarian open source communities to apply. Outreachy will provide funding for 1 intern ($6,500 USD) for humanitarian communities. outreachy.org/blog/2021-01-1…
Two black women sit on a couch, with laptops on their lap. One woman is pointing to the other woman's laptop screen. The other woman is smiling. Photo is cc-by 2.0 WOCinTech Chat

ALT Two black women sit on a couch, with laptops on their lap. One woman is pointing to the other woman's laptop screen. The other woman is smiling. Photo is cc-by 2.0 WOCinTech Chat

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Thank you InterMine! @intermineorg
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Enjoying cutting edge #java with project panama and #rust to get access to bleeding edge #GraphGenomes. Now let's wrap it into a #sparql endpoint #BioHackEU20 !
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What a great online group picture for this very first VIRTUAL #BioHackEU20 COVID-19 hasn't stopped this great interactive week of hacking
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🌟 ELIXIR | Biological Data Analysis Using @InterMineorg, workshop organised by #RachelLyne #DanielaButano under the umbrella of @ELIXIREurope ➡️ eccb2020.info/ntbew03-biolog… #ECCB2020 #biologicaldata #datawarehouse #databases #API
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Today, in collaboration with @stencila, we’re delighted to launch Executable Research Articles (ERA), a truly web-native format for taking published research to a new level of transparency, reproducibility and interactivity 📈elifesciences.org/labs/dc5ac…
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My wrap-up blog for Outreachy Internship! Thank you everyone I met in this internship's period!😆 qiantechlead.wordpress.com/2… @outreachy @intermineorg
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James Taylor (@jxtx) Memorial Fund (JTech) & @cshlmeetings 2020 Biological Data Science Scholarship for grad students to attend 2020 Biological Data Science Conference #biodata20 #usegalaxy galaxyproject.org APPLY BY AUG 1. Galaxy affiliation is not required.
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