@m4ment
Joined February 2016
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Mathieu Fourment retweeted
Matt Macaulay@mattapow17 Jun 2022
So glad to share this work on Bayesian phylogenetics in hyperbolic space! Hyperbolic embeddings change trees from discrete objects into continuous parameters, giving “nearby” trees. arxiv.org/abs/2206.08044
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Great opportunity to do a PhD on a relevant issue. 2 PhD scholarships available to develop realtime outbreak surveillance methods. Join @koadman and myself @ithreeinst. bit.ly/2WM9Skv and bit.ly/2LhnPS6
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Mathieu Fourment retweeted
phyloseminar.org@phyloseminar11 Nov 2019
Tomorrow Cheng Zhang (Peking University) will be describing his work on variational Bayesian phylogenetic inference. Tuesday, November 12, 4:00 PM PST youtube.com/watch?v=8ZnH2daP…
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Today, most Bayesian phylogenetics uses MCMC. But there are other, potentially much faster ways to do Bayesian inference. In a new manuscript @koadman and I explore variational inference in the Stan language as an alternative biorxiv.org/content/10.1101/…

Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics

Recent advances in statistical machine learning techniques have led to the creation of probabilistic programming frameworks. These frameworks enable probabilistic models to be rapidly prototyped and...

biorxiv.org
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