
Instructor at @MGHMartinos, open source dev @mne_news, machine learning, neural time series, PhD @telecomptech '18, @aaltouniversity '15, @iitkgp '12.
Boston, MA
Joined March 2008
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At #SfN18 and wondering how to get started with #BIDS for #MEG/#EEG/iEEG? The first official release of mne-bids is just for you: mail.nmr.mgh.harvard.edu/pip….
Documentation is here: mne-tools.github.io/mne-bids…
Teamwork with @teon_io, @stefanappelhoff, @choldgraf, @agramfort and others!
Mainak Jas retweeted
Do you work with OPM-MEG for neuroimaging 🧠? If you want to DIY your own PCB field nulling coils, check out our new preprint:
biorxiv.org/content/10.1101/…
With @mainakjas, Jack Kamataris, @abbas_neuro, Teppei Matsubara, @mshamalai and others from @MGHMartinos MEG.
Mainak Jas retweeted
Proud to support "MEGnificent brain discoveries" this week, championed by @mcgovernmit & @dimitrpantazis . Excellent presentations by @davidpoeppel , @leylaisi & @sylvain_baillet and #MEG Software Presentations from @mainakjas , Sylvain Baillet and @pelednoam
#MIT #McGovern
Mainak Jas retweeted
Join us Tuesday March 5th, 2024 at 12 pm EDT
for a joint special BrainMap/MEG Seminar Series Webinar at
@MGHMartinos
by Prof. Sylvain Baillet (@sylvain_baillet )
Webinar link: martinos.org/event/brainmap-…
Contact the organizers for more info:
@_SrOsorio
@abbas_neuro
Mainak Jas retweeted
To preprocess or not to preprocess your #EEG (when building #ML models) 🔮? 💫We are thrilled to share our latest #preprint, studying the challenge of learning brain-specific biomarkers from EEG 🧠📶 using #ML ⚙️🖥️: biorxiv.org/content/10.1101/…
We compile arguments and evidence from benchmarking age- & sex-prediction on > 2600 EEGs from two large public datasets.
We found that basic artifact rejection consistently led to better model performance, whereas removal of ocular and muscle artifacts hampered performance. As it turns out that those peripheral signals are predictive themselves!
Our results therefore argue in favor of the need to diligently process EEG data, if the goal is to have brain-specific biomarkers (and if prediction is not the only objective).
Our efforts to build more interpretable #ML models for EEG led us to extending the established Morlet wavelet methodology for spectral analysis of EEG to accommodate state-of-the-art ML models based on covariance matrices. This allowed us to perform head-to-head comparisons between classical EEG features and frequency-specific model predictions for, both, brain and artifact signals.
Compared to classical band-pass filtering, wavelets even led to improvements in prediction performance.
Joint work with Philipp Bomatter, @JP4illard, Pilar Garces & Jörg F Hipp.

ALT Conceptual framework for biomarker learning from EEG (a). Morelet wavelets provide a unified representation for computing classical spectral features (i.e. log power) and covariances used by advanced ML models for EEG (b). Modeling and benchmarking setup for studying the impact of peripheral EEG generators on ML model predictions (c).
Check out this excellent opportunity to join @MGHMartinos and investigate ASD with #MEG 👇👇👇
Mainak Jas retweeted
We’re excited to announce the 0.2 release of hnn-core; a python package for simulating cortical activity underlying #MEG/#EEG. This update includes LFP simulations, optimization, and an easy network modification API. `pip install hnn_core` to try it out! jonescompneurolab.github.io/…
Mainak Jas retweeted
I am pleased to announce the publication of our manuscript in Cell Reports, check it out here: sciencedirect.com/science/ar…
Mainak Jas retweeted
I use pyglmnet and it works great! I don't know if it has particular features for building design matrices, but it allows nice control over regularization parameters and different link functions, as well as different scoring functions. @mainakjas
github.com/glm-tools/pyglmne…
Mainak Jas retweeted
‘Whole-head OPM-MEG enables noninvasive assessment of functional connectivity’
by @MainakJas, @DrStephJones & Matti Hämäläinen, @mshamalai
cell.com/trends/neuroscience…
@TrendsNeuro ‘Spotlight’ on Boto et al., 2021 @NeuroImage_EiC, @MattBrookesMEG
sciencedirect.com/science/ar…
Mainak Jas retweeted
We are happy to announce the release of MNE-Python 0.22.1!🎈 This is mainly a bugfix release 🪲🚫 but also adds support for reading the latest @eeglab2 files. All users of MNE-Python 0.22.0 are encouraged to update.
mne.discourse.group/t/mne-py…
#python #neuroimaging #meg #eeg
Just do "$ pip install hnn_core" to start modeling and testing circuit-level hypotheses on ERFs and spontaneous rhythms! Documentation is here: jonescompneurolab.github.io/…. Feedback and critiques welcome! #brainimaging #python #neuroscience
We're thrilled to announce the 1st release of HNN-core; a streamlined Python package with the utility of HNN + a command line interface. It came from an effort to reorganize HNN’s underlying code and facilitate community engagement in its use & development hnn.brown.edu/hnn-core
Mainak Jas retweeted
Had an awesome time during the @mne_python code sprint this week!
#OpenSource #OpenScience
Pleasure to work with @alex_p_rockhill , @LibertySays , @agramfort , @mainakjas , @stefanappelhoff , @RHoechenberger , and the other mne devs. Sick package for IEEG processing!
Mainak Jas retweeted
The 2nd MNE-Python office hours are today Fri 05 Feb 16:00 UTC (In one hour). More info:
mne.discourse.group/t/next-m…
See you on the MNE discord channel discord.gg/rKfvxTuATa
Mainak Jas retweeted
The problem is not people being uneducated.
The problem is that people are educated just enough to believe what they have been taught, and not educated enough to question anything from what they have been taught. 🧠
Mainak Jas retweeted
WebGL based 3D visualization using ipywidgets and VTK just landed in @mne_python master github.com/mne-tools/mne-pyt… !
Thanks Guillaume Favelier ! 🙌🎉🍾🐍
👇👇👇
Mainak Jas retweeted
We have just released MNE-BIDS 0.6, your friendly #Python tool for working with @BIDSstandard-formatted #EEG & #MEG data! It comes with an interactive data inspector and tons of other enhancements and bug fixes 🎁 Collect this early X-mas present at mne.tools/mne-bids
Mainak Jas retweeted
MNE 🐍 0.21 is out ! PyPi: pypi.org/project/mne/
Release notes: mne.tools/stable/whats_new.h…
#neuroscience #Python #EEG #MEG #neuroimaging Big 🙏 to the 42 Contributors👇
Mainak Jas retweeted
Another nice example of how tools frame the questions we can ask !
I'd argue methods do much the same, especially when data structure is non-obvious (e.g. high-dimensional)
We often forget that David Hubel's groundbreaking work in visual neuroscience was enabled by his modest invention of the modern tungsten microelectrode: science.sciencemag.org/conte….
























