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🚨FULLY FUNDED PHD POSITION!🚨 If you are interested in addressing the question of "How did climate shape the movements, interactions, and evolution of hominin populations?" Come join my lab at the Human Origins Excellence Cluster in Tübingen🧬🧪. Details: uni-tuebingen.de/universitae…
This is a super cool approach to measure the structure of genetic variation
Fst is a key genetic differentiation metric, but it emphasizes common variants over rare.
In @ieeeICASSP out now @geletavc introduces Fq, which can be tuned across the allele freq spectrum.
Fst & Shannon differentiation fall out of it as special cases.
arxiv.org/abs/2511.03063
Cecilia Padilla-Iglesias retweeted
Archaic human parents also had a hard time raising kids.
Deformed head shapes in fossilized humans show their infants were probably just as helpless as modern human babies, requiring constant parental care:
eurekalert.org/news-releases…
Cecilia Padilla-Iglesias retweeted
ARGformer is out in Bioinformatics!
doi.org/10.1093/bioinformati…
Just as PCA produces a low-dimensional representation of population structure from genotypes, ARGformer can do this now for ARGs...a representation that comes now directly from inferred genealogical topologies & at a haplotype level across each individual's genome.
We do this by turning local genealogical paths into tokens & learning dense embeddings, similar to language embeddings, to visualize, cluster & query.
Code
github.com/AI-sandbox/ARGfor…
Team
@d_bonet, Cole Shanks, @marcal_cc, @jordiatjhu
Fantastic paper testing potential effects of cousin marriage on intimate partner violence. Have a read!
New Paper out now in PNAS: Is cousin marriage associated with greater or lower exposure to physical intimate partner violence and coercive control? pnas.org/doi/10.1073/pnas.26…
Cecilia Padilla-Iglesias retweeted
Gnomix is published!
nature.com/articles/s41467-0…
Still the most accurate & fastest local ancestry inference (LAI) method, bests Flare and others (Recomb-Mix & Orchestra) released since our preprint.
Easy use
github.com/AI-sandbox/gnomix
Leads @HelgiHilmars @arvind0422 @BarrabesMiriam
Cecilia Padilla-Iglesias retweeted
New: @JoanSaurina and @alexGioannidis improve on the ADMIXTURE family of methods with a modified EM algorithm utalizing ideas from machine learning that maintains a sort of momentum when optimizing components, resulting in insane (<10hrs for K=50 on UKBB🤯) speedups 1/3
Cecilia Padilla-Iglesias retweeted
🧬We are born with hundreds of de novo DNA mutations that were not present in genomes of our parents. But why do some people have more of them than others?
In a new preprint the authors analyzed 28,985 sibling pairs and identified more than 800,000 de novo mutations. The main factor is parental age especially paternal age with about 1.5 extra mutations per year of the father’s age and 0.4 per year of the mother’s age
The authors did not find convincing evidence that the total number of de novo mutations is associated with genetic ancestry or parental smoking
The most interesting part is rare variants in DNA repair and replication genes. Disruptive variants in REV1 were associated with about a 16% increase in the total mutation rate while variants in LIG1 were linked to a 24 to 26% increase in CpG to TpG mutations
A key feature of the study was the analysis of IBD-segments in siblings genomic regions that both children inherited from the same parental chromosomes. Differences within these regions can point to new mutations.
biorxiv.org/content/10.64898…
#deNovo #mutations #reparation #inheritance #siblings
Cecilia Padilla-Iglesias retweeted
Pan-African model explains Homo sapiens genetic and morphological evolution (preprint) biorxiv.org/content/10.1101/…
Cecilia Padilla-Iglesias retweeted
🚨FULLY FUNDED PHD POSITION!🚨 If you are interested in addressing the question of "How did climate shape the movements, interactions, and evolution of hominin populations?" Come join my lab at the Human Origins Excellence Cluster in Tübingen🧬🧪. Details: uni-tuebingen.de/universitae…
Looking forward to participate on this panel discussion on Friday!
Sign Up - Neanderthal Evolution Symposium Crick Institute - May 15th docs.google.com/forms/d/e/1F…
Cecilia Padilla-Iglesias retweeted
Sign Up - Neanderthal Evolution Symposium Crick Institute - May 15th docs.google.com/forms/d/e/1F…
"The regions in the Denisovan genome attributed to super-archaic introgression, are likely to have originated from H. erectus. Late Middle Pleistocene H. erectus may have coexisted with Denisovans." nature.com/articles/s41586-0…
Cecilia Padilla-Iglesias retweeted
"Hybridization in Animal Evolution" doi.org/10.32942/X21380
Cecilia Padilla-Iglesias retweeted
Want to do an experimental PHD on the evolution of human language? Only one more week left to submit your application!
I'm hiring! 📢 Come work with me on how different social pressures shape the evolution of new communication systems in the lab! Deadline for application is May 18th! mpi.nl/career-education/vaca…
Cecilia Padilla-Iglesias retweeted
From diversity to flexibility: Seasonality as the forgotten dividend of Man the Hunter sciencedirect.com/science/ar…
Cecilia Padilla-Iglesias retweeted
In Eastern Africa, the cradle of humankind is tearing apart phys.org/news/2026-04-easter… via @physorg_com
Cecilia Padilla-Iglesias retweeted
Malaria was fundamental in shaping the course of human evolution, @CamZoology researchers have found.
From 74,000 to 5,000 years ago, early humans in Africa did not live in high-risk malaria areas.
This shaped how populations met and mixed, leading to the population structure seen today.
Read more about this new study in collaboration with the Max Planck Institute of Geoanthropology @MPI_GEA 👉 bit.ly/4e2V2PI
























