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Excited to share our new paper using explainable #AI to learn models of complex cell behavior -- including cell competition -- which we can apply to image-based drug screening. Check out the paper here: biorxiv.org/content/10.1101/…
@G_Charras #bioimageanalysis #imagingthefuture
Alan Lowe retweeted
Super excited to share our new method: Context-dependent Identification of Spatial Motifs (CISM)! 🚀 A two-step approach for uncovering fine-scale intercellular modules associated with human disease states from single-cell spatial data.
doi.org/10.1101/2025.05.05.6…
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Alan Lowe retweeted
🚨🚨 MEGA JOB ALERT 🚨🚨
Independent Group Leader Positions in Computational Biology @humantechnopole!
Are you ready to start your own lab? Do you know someone who is? Repost this + share with everyone who might want to know about it. Thanks!!! 🙏
More details below... 🧵 1/3
Alan Lowe retweeted
“AI has the potential to revolutionize cell biology, and cell biologists will play an essential role in driving this revolution,” say @ambrosejcarr, @JCoolScience, @Tkaraletsos, @DrDonghuiLi, @quantumjot, @Stephani_Otte, and @slschmid_CZB.
👀paper: molbiolcell.org/doi/10.1091/…
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Alan Lowe retweeted
Let me introduce: InstanSeg 🦠🔬💻👩🔬
This *would* have been a short thread about Thibaut Goldsborough’s PhD work… but he solved too many problems.
Now it's a long thread about 2 preprints, a whole new approach to cell segmentation & #opensource software to make it easy to use
Alan Lowe retweeted
📡🧵 Excited to release our preprint: Ultrack: Pushing the Limits of Cell Tracking Across Biological Scales
doi.org/10.1101/2024.09.02.6…
A tour-de-force by @jobragantini, #Ultrack is a versatile, highly accurate, and fast ILP-based cell tracking software for 2D, 3D, and multicolor datasets. It has convenient @napari_imaging and @FijiSc plugin interfaces and built-in HPC cluster support.
github.com/royerlab/ultrack
#cell_tracking #microscopy #devbio @czbiohub
Alan Lowe retweeted
🚨 Job Alert!
Want to help build the next generation of #AI-powered #bioimaging models?
At @cziscience, the AI/ML team is building one of the largest computing systems dedicated to nonprofit life science research in the world.
boards.greenhouse.io/chanzuc…
Alan Lowe retweeted
WebAtlas for visualising single cell & spatial data online is out: rdcu.be/dRsKu With @Muzz_Haniffa @BioinfoTongLI @Dave_Horsfall+co, we aimed to open up sc/spatial data to biologists & clinicians without coding experience/infrastructure. Rambling🧵on why this matters
🚨 Job Alert!
Want to help build the next generation of #AI-powered #bioimaging models?
At @cziscience, the AI/ML team is building one of the largest computing systems dedicated to nonprofit life science research in the world.
boards.greenhouse.io/chanzuc…
Alan Lowe retweeted
🆕 in CZ #CellxGene Explorer: support for spatial transcriptomics datasets!
Learn more below + try it out with one of 400+ curated datasets ➡️ bit.ly/3Agi7MX
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ALT Screenshot of CellxGene Showing tissue view of the embryonic footplate, with an inset view of the UMAP position of the cells. The sides show various filters and tools for differential gene expression analysis.
Alan Lowe retweeted
Whoop whoop! We are live! 🥳
You can now register for #I2K2024!
events.humantechnopole.it/ev…
🚨 Due to limited space, we will first accept only those who have previously submitted an abstract or a workshop.
Later we will fill the remaining slots with others who signed up until then.
🎯Join us in Milan for #I2K2024!
🔬Registration for the 2024 edition of I2K Conference is now open! Priority will be given to workshop and abstract submitters. You are still in time to submit your abstract!
Info and registration👉 humantechnopole.it/en/traini… #BioImageAnalysis
I'm excited to announce that I have joined @ChanZuckerberg as Director of AI for imaging
One of my favourite leaving gifts, from a former student, was a limited edition physical copy of their PhD thesis entirely typeset in COMIC SANS
Alan Lowe retweeted
Today, accepted @eccvconf submissions were announced. Hope you made the cut! 🤞
If you did not and your work happens to be on bio image data… consider submitting to BIC! This WS really became a quite useful venue in the past years!
bioimagecomputing.com/call-f…
Please RT! 🙏
Alan Lowe retweeted
One week left to apply! This is a great opportunity to develop a cutting-edge research program in bioimage analysis and computer vision together with world-leading developmental biology and image-based systems biology pioneers.
jobs.uzh.ch/offene-stellen/a…
Alan Lowe retweeted
I’m very proud that #cellPLATO is published in @J_Cell_Sci, A cell migration time-lapse analysis tool that has been a long time in the making. Thanks to @mshanj @mace_em @ShiraEisman @quantumjot
journals.biologists.com/jcs/…
Today marks my last day @ucl and @turinginst, where I had the privelege to build my experimental and computational research groups. It's been an adventure made thoroughly enjoyable by the fantastic students, researchers and colleagues at both institutions. #newadventure
This is awesome! Really looking forward to reading the paper
And trackastra performed best overall on the latest cell linking challenge! Congrats @bengallusser 🥳
Alan Lowe retweeted
We have a fantastic project in collaboration with the best marine biologists studying weird and beautiful critters with EM and deep representation learning. Please, please, please, apply, or send your best students my way!
The EMBL International PhD Programme 2024 Summer recruitment is still open for applications until 11 March. #PhD #research
Take a look at our website for more information: embl.org/about/info/embl-int…
