@solgenomics

Online database for plant biology. Tweets by @SahaSurya

 Ithaca, NY
solgenomics.net
Joined June 2010
  • Tweets471
  • Following35
  • Followers555
69Media
New #tomato reference SL4.0 and annotation ITAG4.0 released in time for the XVI #Solanaceae Conference #sol2019 🍎🍎🍎🍎🍎🍎🍎🍎 Highlights: solgenomics.net/organism/Sol… Preprint: biorxiv.org/content/10.1101/…
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Check out Cassavabase.org to see this in action. More details at breedbase.org/ #PAG30
Aureliano Bombarely@aubombarely14 Jan 2023
Lukas Mueller closes the Allele Mining session at #PAG30 with a presentation about BreedBase. He mention that BreedBase derives from CassavaBase and initially from SGN @solgenomics. He talks about a digital ecosystem based on Standard Operating Procedures (SOP) for trials, SNP…
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Also includes amazing graphics by @Marina_Entom The methods flowchart is my favorite #MethodsMatter xitter.cf/SahaSurya/status/16111…
Abstract

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Methods!!!

ALT Methods!!!

Surya Saha 🧬⚙️👨‍💻📊@SahaSurya5 Jan 2023
The updated preprint for the Asian citrus #psyllid genome v3.0 is online biorxiv.org/content/10.1101/… with updated sections on transcription factors, sex chromosome, educational impact and of course manual #annotation @Arthropod_i5K

Diaci v3.0: Chromosome-level assembly, de novo transcriptome and manual annotation of Diaphorina...

Background Diaphorina citri is a vector of “ Candidatus Liberibacter asiaticus” ( C Las), the gram-negative bacterial pathogen associated with citrus greening disease. Control measures rely on...

biorxiv.org
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Data Management in Multi-disciplinary African RTB Crop Breeding Programs link.springer.com/chapter/10…
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Sol Genomics Network retweeted
Zhangjun Fei@fei_lab8 Jun 2022
Pan-genomes of tomato and potato. Back-to-back papers in Nature by Sanwen’s group. nature.com/articles/s41586-0… nature.com/articles/s41586-0…
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Sol Genomics Network retweeted
Boyce Thompson Inst
@BTIscience19 Apr 2022
#CitrusGreening disease is ravaging the US citrus industry. BTI’s @SahaSurya tells us about his efforts enlisting undergraduate students in the fight against this devastating agricultural disease. youtu.be/iE1OzbAR02o
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Sol Genomics Network retweeted
usadellab@usadellab19 Apr 2022
The "very wild" Solanum lycopersicoides genome and introgression line maps shedding light on sec. metabolites & stress tolerance. Collaboration with so many great colleagues colleagues @BTIscience @fei_lab @solgenomics @JohnInnesCentre @MPIMP_Potsdam ... doi.org/10.1111/tpj.15770

A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism...

We present a new genome resource for the wild species Solanum lycopersicoides, which we use to shed light on the Aubergine locus responsible for anthocyanin production. We also provide introgression...

onlinelibrary.wiley.com
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Sol Genomics Network retweeted
Boyce Thompson Inst
@BTIscience12 Apr 2022
#CitrusGreening disease is ravaging the US citrus industry. Join BTI’s @SahaSurya in this month’s Breaking Ground as he tells us about his efforts enlisting undergraduate students in the fight against this devastating agricultural disease. bit.ly/BreakingGround_SuryaS… 4/19, 12pm EST
A close up of an orange that has turned green from citrus greening disease

ALT A close up of an orange that has turned green from citrus greening disease

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Replying to @SahaSurya @AgBioData
Please submit feedback via issues github.com/NAL-i5K/AgBioData…

Issues · NAL-i5K/AgBioData_GFF3_recommendation

The AgBioData GFF3 working group has developed recommendations to solve common problems in the GFF3 format. We suggest improvements for each of the GFF3 fields, as well as the special cases of mode...

github.com
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Do you use GFF3 files? Do you have to interpret bespoke attributes and custom tweaks before you can parse them? You might want to check out recommendations from the @AgBioData GFF3 working group for refining the GFF3 format github.com/NAL-i5K/AgBioData… #genomics #FAIR
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ICYMI - Research Associate position open in the Mueller lab to work on @CitrusGreening and AgriVectors projects Opportunities to develop independent and collaborative research projects!! xitter.cf/CitrusGreening/status/… #AcademicJobs #Database #Ag #insect #plants #Bioinformatics
Citrus Greening@CitrusGreening28 Sep 2021
Interested in ag-related omics #databases and project management? Research Associate position open in the Mueller lab @BTIscience @Cornell #PhDjobs #citrusgreening #AcademicJobs bti.hrmdirect.com/employment…
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Research Associate position open in the Mueller lab @BTIscience @Cornell for @CitrusGreening and AgriVectors projects Plenty of opportunity to develop independent and collaborative research projects!! #AcademicJobs #Database #bioinformaticsjobs xitter.cf/CitrusGreening/status/…
Citrus Greening@CitrusGreening28 Sep 2021
Interested in ag-related omics #databases and project management? Research Associate position open in the Mueller lab @BTIscience @Cornell #PhDjobs #citrusgreening #AcademicJobs bti.hrmdirect.com/employment…
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Sol Genomics Network retweeted
Jenna Hershberger@jennahersh21 Sep 2020
Interested in using spectral data in your plant breeding program? 📸🌱🌈 Check out 𝒘𝒂𝒗𝒆𝒔, our new #rstats package now on #CRAN with Breedbase integration! @GoreLab_Cornell @solgenomics @robbins_lab #CornellSIPS cran.r-project.org/package=w…
bioRxiv@biorxivpreprint20 Sep 2020
Making WAVES in Breedbase: An Integrated Spectral Data Storage and Analysis Pipeline for Plant Breeding Programs biorxiv.org/cgi/content/shor… #bioRxiv
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Please share or consider applying: Recent MS graduate interested in #genomics and #databases? We are looking for a #bioinformatics programmer for @CitrusGreening @solgenomics and @NextGenCassava. Lots of opportunities for collaborative research bti.hrmdirect.com/employment… #jobs
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Sol Genomics Network retweeted
Boyce Thompson Inst
@BTIscience11 Nov 2020
The 2020 Solanaceae International Online Meeting was a huge success! The event was organized by several BTI community members. Congrats to all involved! solgenomics.net/sol2020 @solgenomics #SOLIOM2020
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Sol Genomics Network retweeted
Aureliano Bombarely@aubombarely10 Nov 2020
We would like to thanks all the attendants of our Network of genes and metabolites session at #SOLIOM2020. We got a peak of 350 participants attending it.
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Sol Genomics Network retweeted
Estefania Tavares@EstefaniaTav10 Nov 2020
'Uncovering of epistasis effects between two closely related MADS-box genes in🍅(j2&ej2) associated with inflorescence branching' - And how breeder neutralized this negative epistasis? - Sebastian Soyk beautifully explained the molecular cues behind this phenomenon! #SOLIOM2020
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Sol Genomics Network retweeted
Aureliano Bombarely@aubombarely10 Nov 2020
#SOLIOM2020 - @Matt_Ben_ : 80% of the Insertions/Deletion SVs in tomato are associated to #TE. Gypsy and Copia are the main contributors. A single TE family, #Rider, explains > 25% of these events. Some of them have been associated to phenotypic diversity.
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Sol Genomics Network retweeted
Giovanni Giuliano@giulianolab19 Nov 2020
First day of the Solanaceae online workshop. 380+ participants, lots of interesting talks, posters, and discussion. #SOLIOM2020
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Sol Genomics Network retweeted
Aureliano Bombarely@aubombarely9 Nov 2020
Replying to @SandyKnapp
@SandyKnapp closes the session for #SOLIOM2020, reminding about the break and the poster session. She also mention that there is a Solanaceae Diversity Seminar series at physaloidseminars.weebly.com…. I agree, it is highly recommended! (#SolSeminarOnline).
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Still accepting applications!! Lots of opportunities to get involved in insect genomics, plant disease, plant-insect-pathogen projects and breeding databases @BTIscience @Citrusgreening @Solgenomics @NextGenCassava #jobs #bioinformatics xitter.cf/SahaSurya/status/13149…
Surya Saha 🧬⚙️👨‍💻📊@SahaSurya10 Oct 2020
Interested in genomics and FAIR databases? We are looking for a bioinformatics programmer for @citrusgreening @solgenomics and @NextGenCassava plant breeding projects in the lab @BTIscience. More info bti.hrmdirect.com/employment… #job #Biogenomics20 Questions? Let me know!
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