neurodegeneration postdoc | prev: @umichmedicine (PhD) @oberlincollege (BA) | midwesterner on the west coast

Joined June 2018
Super excited about my first, first-author being published the day after my defense! 🥳🥂✨ Keep an eye out for the second half of my PhD research, we're hard at work getting it wrapped up for submission 🙂
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Kate M. Van Pelt, PhD ✨ retweeted
Chemistry really is the final frontier. Or rather the first place where computationalists realize the universe is indeed not a computer.
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Kate M. Van Pelt, PhD ✨ retweeted
Wherein a couple of tech bros get excited that Claude can propose exactly the same things that researchers did a few years ago
What is AI really capable of in bio? To separate hype from reality, we spent 3 months working firsthand with @AnthropicAI's internal research model to see if it could create an experimental scorpion antivenom. Introducing Citrini Therapeutics. citriniresearch.com/p/citrin…
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*clutches pearls* not MY bitter lesson!
god these two charts really hurt my soul 64 hours to dry lab design an multi-binding antivenom and 39 days for results and 4-7 years to release
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“we tried to use AI to do biology, & it was great at the all-computer part! unfortunately we were shocked and horrified to learn that experiments performed in a lab take time, even days or weeks! some are saying months! this sucks”
Where do you go next after reporting from the Strait of Hormuz? For the past three months, Citrini Research, an independent research firm, has been working with our team and an internal research model to see if they could use AI to create a new drug. What follows is an entertaining, candid, and humbling account of a group of motivated nonexperts (or “filthy casuals”, as Citrini would say) trying to tackle a real problem in human health with Claude. We landed on scorpion neurotoxins, which kill over 3,000 people a year. Of the 211 designs we produced and tested, 17 met our criteria for a binder. None of the designs bound more than one toxin and none have been tested for neutralizing a toxin. One of my favorite quotes from the piece is: “Our virtual biologist may have compressed a year's worth of work into a couple days, but biology works at the speed of life…Over two days, we watched Claude work through problems at a speed that was difficult to comprehend. For the next two months, we spent much of the time becoming familiar with laboratory turnaround times (This mostly involved sending memes in Slack).”
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Kate M. Van Pelt, PhD ✨ retweeted
Anyone thinking that the labs are going to make serious, independent efforts in biotech is tech-brained and doesn't really understand the industry imo. Their supposed edge is in generating potential drug candidates, which is not and has never been the problem
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Kate M. Van Pelt, PhD ✨ retweeted
We spent several months and hundreds of thousands of dollars trying to make a better antivenom. We didn't do it, but we had a lot of fun playing on the computer and ordering CROs around
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checking my phone during a break at my job where i work as an actual molecular biologist in an actual lab studying the pathology of Alzheimer’s and other neurodegenerative diseases only to see another tech bio slop YC startup grift grace my timeline 😩😩😩
You can have Alzheimer's for 15 years and not know it. We can finally slow it down. But only if we catch it early. So we built the earliest test for it. Saccade (YC F26)
Readers added context they thought people might want to know
Under FDA rules (21 CFR 812.7), promotion of an investigational device as safe or effective is prohibited. This post violates FDA rules. ecfr.gov/current/title-…
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rebranding my skillset to better appease the new AI ruling class
hey, if you can’t beat ‘em, join ‘em - I’m not a wet lab scientist, I’m a scrappy postdoctoral dropout leveraging AI-directed experimentation (I make it do dilution math) to screen novel compounds (AI orders random drugs from Sigma) in vivo at scale (know a guy w/ lots of rats)
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Kate M. Van Pelt, PhD ✨ retweeted
Please stop calling the AI companies “labs” They are not labs They are venture-backed for-profit entities Calling them “labs” really obscures what is happening
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Kate M. Van Pelt, PhD ✨ retweeted
it’s hard to overstate the degree to which people (and people’s life’s work) are seen as mere grist for the mill of building better models to increment some fuck-ass benchmarks by these people, and it shows in the products
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"Most teams in drug-discovery don’t receive target-organism verification until clinical trials." I imagine if said teams were also trying to ID pesticides that kill worms vs drugs that treat diseases in human beings, they'd also get target-organism verification much quicker!
We built an 8000 sqft. high-throughput wet-lab in 30 days, to solve molecular discovery - starting with pesticides. Most teams in drug-discovery don’t receive target-organism verification until clinical trials. Pesticides allow us to rapidly validate our model in the target organism directly. With the help of our high-throughput lab, we were able to generate compounds that killed a $13 billion pest, the Fall Armyworm. We believe that the bitter lesson is coming for biology.
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why is every AI tech bro obsessed with using AI in the least effective ways possible when it comes to bio you know what else can instruct an undergrad to pipet & come up with experiments? me the bitter truth is you all need to step it up and try harder lmao
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again, my issue w/ AI/bio is not that it’s impossible to revolutionize the field, but that I haven’t seen good evidence of AI companies doing this. spending tons of $ doesn’t guarantee a new cancer drug. we have no proof that the body can be modeled on a computer like a website
Replying to @PermitZIPhvac
sure, it’s possible. all I’m asking is that AI folks acknowledge the serious issues of applying AI to bio & that it’s a completely different field than software. I have no reason to take them at their word that it’ll all be magically solved w/ no proof. that’s not how this works
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it’s not a magic wand, and I can’t take people seriously who don’t engage with the actual limitations of leveraging this technology to improve human health hand-waving away the technical challenges by pointing to advancements in wholly unrelated fields just doesn’t work, sorry
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looking at open AI’s accomplishments in pure math and saying “naturally, we will next cure all human disease” makes you sound like you’re a moron with no appreciation for fields that require hands-on experimentation and validation with actual living things
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Kate M. Van Pelt, PhD ✨ retweeted
Please stop talking about “solving [x field]” you all sound like giant nerds
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Kate M. Van Pelt, PhD ✨ retweeted
It’s funny to see a person loading an SDS-page manually on a video hyping up an AI frontier lab doing biology now. It’s like bragging about space flights while riding a half-dead horse
Replying to @AnthropicAI
This is the first result from our new molecular biology lab, where a team of Anthropic biologists is using Claude to explore and accelerate fundamental biology research. There, Claude works through data and literature to generate hypotheses and candidate biological systems to study. After our scientists review Claude’s hypotheses, they test the most promising ideas, with all lab work done by our scientists. We’d like to extend this approach to a broad range of problems—in genomics and in other fields. If you have a proposal for a research question, we’d like to hear from you.
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Kate M. Van Pelt, PhD ✨ retweeted
i really wish there was a way to see tweets about technology without also filling my timeline with slop from the sf/vc mind virus
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Kate M. Van Pelt, PhD ✨ retweeted
“a bunch of scientific experts with deep domain expertise designed and maintained a computational biology pipeline to suggest candidates, evaluated the results, and tested the most promising ones” is not “Claude discovered it” this is so gross
Today we announced the Claude-led discovery of a molecular machine that we suspect could represent a new gene editing mechanism. Its precise function, biotechnological utility (if any), or level of significance is not yet clear, but at minimum it is work I would have been proud to do as a PhD student. The work was done mostly, though not entirely, by Claude: our life sciences team suggested a broad area of research, Claude read through the literature and a bunch of genome data and discovered something interesting, then Claude proposed experiments to verify the discovery and our team carried them out. It’s easy to dismiss this as a one-off or curiosity, but we’ve repeatedly seen a pattern where AI performance in new intellectual domains goes from weak to superhuman in a matter of a few years. In 2023 models struggled to do math at the level of an average high-school student. In 2024 they started to do well on math competitions for the best high-schoolers in the country, in 2025 they started to solve minor open problems, in early 2026 more significant open problems, and in late 2026 they are beginning to solve the top few open problems in all of mathematics. We believe AI for biology is on a similar exponential trend. The main difference between biology and mathematics, of course, is that math can be done purely theoretically, while biology requires experimentation. Some have used this to draw the conclusion that AI’s utility in biology will be limited. We think this is wrong. As we’ve demonstrated today, humans can collaborate with AI to perform the experiments, validate key results in a few weeks and, if necessary, work with the AI to iterate on what they find. Eventually it may even be possible for Claude itself to safely perform the experiments by autonomously controlling lab equipment, with appropriate safeguards in place, but we aren’t doing that today (our lab is also a BSL1/BSL2 facility that doesn't handle materials dangerous to humans). More broadly, biomedical advancement has many stages — from fundamental biology discoveries, to translational research, to drug discovery, clinical trials, and finally the actual delivery of medicines and health care to patients. We are also interested in these later stages, but even simply accelerating the first stage of fundamental biological discoveries has the potential to speed up and broaden the entire pipeline. Improving our understanding of biology and sharpening biologists’ tools can drive forward all of the later stages, for example by identifying new drug targets, finding new therapeutic modalities, allowing for more precise measurement, and speeding up the experimental loop which itself further accelerates our understanding of biology. This will not in itself speed up clinical trial times, but if it succeeds it could greatly increase the number of promising candidates that go into the pipeline — an increase in throughput even though latency remains. In Machines of Loving Grace, I wrote about AI’s potential to “cure most diseases in 5-10 years” — a goal that sounds impossible, but one I believe is just barely possible if AI is applied to every stage of the pipeline. The first step is showing that AI can first help with, and then drive, biological discoveries. Claude’s discovery is the latest in a line of related prior work that goes back decades, beginning with systems like CRISPR, and continuing with discoveries like the bridge recombinase and VIPR in the past few years. Recently, there has been heightened interest in systems based on reverse transcriptase (RT) enzymes, the enzyme underlying the system Claude identified. And most recently, a Stanford team working independently described a novel RT system with an associated non-coding array that is in some ways similar to the one Claude found, though they are distinct systems that evolved independently from each other. I believe that we’re at the very beginning of finding such systems and developing them into powerful tools for biotechnology. I’m proud of the resources Anthropic has invested in accelerating the public benefits of AI through the life sciences, and we’re aiming both to grow our life sciences team and to work with other scientists to extend this approach to a broad range of problems. If you have a proposal for a research collaboration or are interested in joining our life sciences team, please reach out.
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Kate M. Van Pelt, PhD ✨ retweeted
Replying to @taoburr
I’ve built DNA synthesizers and sequencers by hand. I used the engineer viruses for a living. I used to engineer human immune evasion for therapeutic constructs. Who the fuck are you people? Have you ever so much as held a pipette before? You can spaghetti blast an ensemble of DNA sequences at some shitty provider but 1) you still have to assemble it and bootstrap a system for making virions 2) you are not single shotting a viable, virulent viral design without a ton of experimental selection and development. Viral fitness is deeply dependent on codons and cotranslational kinetics - you’re not just gonna obfuscate away from wild type and get something good by magic. You keep treating AI like some kinda god, but molecular physics has computational complexity that scales exponentially in particle number which just crushes the abilities of any classical computer to do end-to-end design of biological functions ab initio. Grabbing a bunch of bacteriophage phi174 hits from a mass ensemble screen in lab microbes is not evidence of some magical AGI bio design ability - it's just a classic spray and pray selection. This is just nothing like building something viable in humans. Goddamn it read some books before you waltz into biomedicine and lecture us on protecting human life.
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