Microbes, Viruses & Mobile Genetic Elements | Ass. Prof. for Eco-Evolutionary Bioinformatics | Dad, husband and occasional mushroom hunter

Groningen
Joined September 2015
We’re recruiting a PhD student (Fall 2026) to study the ecology & evolution of aquatic giant viruses! Research spans lab experiment, field sampling, & bioinformatics. Background in microbiology/bioinforamtics encouraged. More information: monirlab.com/join/ Please retweet!
1
14
40
8,906
Thomas Hackl retweeted
Funded postdoc + PhD opportunities in marine microbial ecology! Please share with folks that might be interested. Start date is flexible (fall 2025 to summer 2026) More about the lab + applying (Postdoc rolling, PhD apps due Oct/Jan): sites.google.com/uncc.edu/mi…
2
60
117
10,981
We have a 3-year postdoc position in our group at the HIFMB to study plasmids and plasmids systems of the marine environment to survey their utility in microbial responses to environmental change. Please see the official job ad here and spread the word: jobs.awi.de/Vacancies/2002/D…
2
28
1
39
4,725
Are you interested in finding giant viruses, virophages, and PLVs inside your metagenomes? Struggling to figure out an easy way to do so? Look no further than BEREN, a one-stop-shop tool for recovery, taxonomy, and annotation of these viruses. biorxiv.org/content/10.1101/…
3
14
1
53
6,365
Many of us want to detect & infer roles of giant virus in metagenomes but are limited by available tools and bioinfo expertise. BEREN is a modular, one-stop-shop for giant virus & virophage identification in metaG datasets. Latest from our lab, spearheaded by @Benjamin_Minch !
3
10
38
3,221
detectEVE: fast, sensitive and precise detection of endogenous viral elements in genomic data biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
1
5
1
12
5,312
Happy to finally see our (improved) version of our EVE detection pipeline out for everyone to use :) with @brait_nadja and @th4ckl
detectEVE: fast, sensitive and precise detection of endogenous viral elements in genomic data biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
1
11
30
3,253
Thomas Hackl retweeted
Starships carry important cargo genes that have been previously investigated. These include the biosynthetic gene clusters for Fumihopaside A, and Fumigermin. As well as the HAC cluster that contributes to virulence, hypoxia, and biofilm formation.
2
3
9
576
ICTV's long-anticipated Computational Virus Taxonomy Challenge is out! Bioinformaticians are asked to classify unknown virus sequences and contribute to making Virus Taxonomy more reproducible. See: ictv-vbeg.github.io/ICTV-Tax… - please RT, tell your bioinformaticians and colleagues!
1
49
70
9,681
Do endogenous virophages protect their protist hosts from giant viruses? For the marine heterotrophic flagellate Cafeteria sp., it very much seems so. Congrats to Anna Koslová, @th4ckl and co-workers at @mpi_mr_hd on a new study published in @PNASNews ! pnas.org/doi/10.1073/pnas.23…
2
45
3
89
12,653
I’m hiring! Looking for a PhD candidate with a passion for soil microbiology to join me in Tübingen studying phage interactions with #soil (micro)habitats and the implications for their ecology. #PhDpositions @uni_tue Details here: uni-tuebingen.de/securedl/sd…
10
103
4
146
19,164
Thomas Hackl retweeted
The meeting takes place back-to-back with the annual Netherlands Association of Virus Ecology meeting the next day, which will also be great - make the most of a trip to Groningen! See this post for more information: xitter.cf/Mark_P_Zwart/status/17…
Virus enthusiasts in and around the lowlands: on March 22 we will have the annual Netherlands Association of Virus Ecology meeting in Groningen. Looking forward to seeing you there! See knvm.org/virology/networks/n… for more details or PM me.
2
1
535
Thomas Hackl retweeted
Are you interested in Microbial Ecology and want to join an awesome Dutch community? Consider signing up to the annual Integrative Microbial Ecology meeting in Groningen on March 21 2024. Visit sites.google.com/view/qme-nl… for more information and a link to register!
1
17
38
5,344
Thomas Hackl retweeted
And while you are visting Groningen, why not join the Integrative / Quantitative Microbial Ecology Meeting on day before (21st of March)? Contact @th4ckl for details.
1
1
181
Thomas Hackl retweeted
Virus enthusiasts in and around the lowlands: on March 22 we will have the annual Netherlands Association of Virus Ecology meeting in Groningen. Looking forward to seeing you there! See knvm.org/virology/networks/n… for more details or PM me.
1
14
1
32
3,099