@transcriptomes

Transcriptome feed using #Rstats by @davetang31. Updates made each day 16:00 EST. Image from https://xitter.cf/t.co/V4zET1jchu

 On a server somewhere
davetang.org/muse/2015/01/31/transcriptome-feed-using-r/
Joined January 2015
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Protocol for integrated analysis of bacterial RNA-seq and ChIP-seq data for establishing a co... ncbi.nlm.nih.gov/pubmed/3721…

Protocol for integrated analysis of bacterial RNA-seq and ChIP-seq data for establishing a co-exp...

Transcriptomic data and ChIP-seq data from bacteria are systematically analyzed and efficiently combined. We describe the software environment for analysis and the download and installation methods....

pubmed.ncbi.nlm.nih.gov
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Developmental and genetic basis of the androgynophore in Gynandropsis gynandra. ncbi.nlm.nih.gov/pubmed/3721…

Developmental and genetic basis of the androgynophore in Gynandropsis gynandra - PubMed

Our morphological characterizations and high-quality transcriptome for G. gynandra suggest that the androgynophore is a novel structure formed via elaboration of both the receptacle and base of...

pubmed.ncbi.nlm.nih.gov
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Transcriptome profile analysis of Indian mustard (Brassica juncea L.) during seed germination... ncbi.nlm.nih.gov/pubmed/3721…
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Transcriptomic evidence indicates that montane leaf beetles prioritize digestion and reproduc... ncbi.nlm.nih.gov/pubmed/3721…
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Acrylonitrile butadiene styrene microplastics aggravate the threat of decabromodiphenyl ethan... ncbi.nlm.nih.gov/pubmed/3721…
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Polystyrene microplastics trigger adiposity in mice by remodeling gut microbiota and boosting... ncbi.nlm.nih.gov/pubmed/3721…
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Non-invasive preeclampsia prediction using plasma cell-free RNA signatures. ncbi.nlm.nih.gov/pubmed/3721…
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Screening core genes and signaling pathways after SFTSV infection by integrated transcriptome... ncbi.nlm.nih.gov/pubmed/3721…

Screening core genes and signaling pathways after SFTSV infection by integrated transcriptome...

A newly discovered tick-borne virus called the severe fever with thrombocytopenia syndrome virus (SFTSV) can cause the severe fever with thrombocytopenia syndrome (SFTS). The mortality and incidence...

pubmed.ncbi.nlm.nih.gov
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Case-control virtual histology elucidates cell types associated with cortical thickness diffe... ncbi.nlm.nih.gov/pubmed/3721…

Case-control virtual histology elucidates cell types associated with cortical thickness differences...

Many neuropsychiatric disorders are characterised by altered cortical thickness, but the cell types underlying these changes remain largely unknown. Virtual histology (VH) approaches map regional...

pubmed.ncbi.nlm.nih.gov
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Methylome and transcriptome data integration reveals aberrantly regulated genes in equine sar... ncbi.nlm.nih.gov/pubmed/3721…
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Comparative transcriptome analysis of Veratrum maackii and Veratrum nigrum reveals multiple c... ncbi.nlm.nih.gov/pubmed/3721…

Comparative transcriptome analysis of Veratrum maackii and Veratrum nigrum reveals multiple...

Veratrum (Melanthiaceae; Liliales) is a genus of perennial herbs known for the production of unique bioactive steroidal alkaloids. However, the biosynthesis of these compounds is incompletely...

pubmed.ncbi.nlm.nih.gov
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Deciphering dynamic changes of the aging transcriptome with COVID-19 progression and convales... ncbi.nlm.nih.gov/pubmed/3721…

Deciphering dynamic changes of the aging transcriptome with COVID-19 progression and convalescence...

Deciphering dynamic changes of the aging transcriptome with COVID-19 progression and convalescence in the human blood

pubmed.ncbi.nlm.nih.gov
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Single-Cell RNA Sequencing and Spatial Transcriptomics Reveal Pathogenesis of Meningeal Lymph... ncbi.nlm.nih.gov/pubmed/3721…
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Inhibiting Osteolytic Breast Cancer Bone Metastasis by Bone-Targeted Nanoagent via Remodeling... ncbi.nlm.nih.gov/pubmed/3721…

Inhibiting Osteolytic Breast Cancer Bone Metastasis by Bone-Targeted Nanoagent via Remodeling the...

Bone is one of the prone metastatic sites of patients with advanced breast cancer. The "vicious cycle" between osteoclasts and breast cancer cells plays an essential role in osteolytic bone metasta...

pubmed.ncbi.nlm.nih.gov
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Epitranscriptomic profiling of N4-acetylcytidine-related RNA acetylation in the spinal dorsal... ncbi.nlm.nih.gov/pubmed/3721…

Epitranscriptomic profiling of N4-acetylcytidine-related RNA acetylation in the spinal dorsal horn...

Recently, epigenetics involved in the regulation of gene expression has become a research hotspot. This study evaluated N4-acetylcytidine (ac4c) RNA acetylation in the spinal dorsal horn (SDH) of...

pubmed.ncbi.nlm.nih.gov
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Transcriptome profiling reveals the expression and regulation of genes associated with Fusari... ncbi.nlm.nih.gov/pubmed/3721…
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Scaling the invisible wall: Molecular acclimation of a salinity-tolerant diatom to freshwater... ncbi.nlm.nih.gov/pubmed/3721…
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Multiple paths of plant host toxicity are associated with the fungal toxin cercosporin. ncbi.nlm.nih.gov/pubmed/3721…

Multiple paths of plant host toxicity are associated with the fungal toxin cercosporin - PubMed

The Cercospora species of fungi are responsible for leaf spot disease affecting many key economic crops. Most of these fungi secrete a toxic photodynamic molecule, cercosporin, that reacts with light...

pubmed.ncbi.nlm.nih.gov
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Hydrogen peroxide regulates the Osa-miR156-OsSPL2/OsTIFY11b module in rice. ncbi.nlm.nih.gov/pubmed/3721…
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Identification and validation of core genes in tumor-educated platelets for human gastrointes... ncbi.nlm.nih.gov/pubmed/3721…

Identification and validation of core genes in tumor-educated platelets for human gastrointestinal...

Gastrointestinal (GI) tumors have increasing incidence worldwide with their underlying mechanisms still not being fully understood. The use of tumor-educated platelets (TEPs) in liquid biopsy is a...

pubmed.ncbi.nlm.nih.gov
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