BioGPS is a free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function.

Joined July 2009
NEW #variant surveillance tool from @cvisb @scrippsresearch: Search by location to find #SARSCoV2 lineage & mutation prevalence in any country, state, or region at outbreak.info/location-repor… #COVID19 #opendata
6
5
The Center for Viral Systems Biology at Scripps Research is tracking the new #SARSCoV2 #variants and making the situation reports publicly available on the Outbreak.info dashboard scripps.edu/news-and-events/… @DiseaseOutbreak @cvisb #openscience
12
8
One challenge of unprecedented #openscience is ensuring F.A.I.R.ness. Here's how we addressed it for #COVID19 information. #FAIRdata outbreak.info/blog/outbreak-…
Learn more about the evolution of our tools from @BioGPS to @mygeneinfo, @variantinfo, the @biothingsapi #SDK and more.
The API for @DiseaseOutbreak (outbreak.info) was built using our #SDK. Learn more about our #SDK in our latest post: biothings.io/blog/building-a…
outbreak.info is a #COVID19 data and resource sharing site built using the @biothingsapi #SDK and the #CD2H Data Discovery Engine. Learn more about how these tools were used. sulab.org/2020/09/building-a…
Learn how you can become a #CitizenScientist & contribute to crowd-sourced data that's helping to solve some of our greatest biomedical challenges. Prof. @andrewsu will tell us all about it this Thursday at our next #FrontRow lecture. Register now: scrippsresearch.zoom.us/webi…
My lab has bioinformatics job openings for 2 projects -- Alzheimer's drug repurposing described 👇, and API/data interoperability using github.com/biothings/biothin…. Applicants for postdoc, staff scientist, & developer positions are welcome. Email for more, #URM encouraged to apply!
Truly a weird feeling, but I think I'm actually a bit ahead of schedule for an upcoming grant proposal submission. So as an experiment, I'm opening up my current draft for public comment. Topic: Drug repositioning for Alzheimer's Disease. Link: docs.google.com/document/d/1…
Our recent @eLife experience was awesome. The editor summarized the critique from individual reviews, and we addressed those. No moving goal posts, and the critique summary was published with our response. Great author experience -- I wish all journals did this
Disappointed on decision of revised manuscript. While previous concerns addressed, manuscript sent to a new reviewer, 5 more major points requiring new experiments. ‘We hope you will be able to address in full...” Anyone else receiving similar reviews?
4
16
Our services are fast so that they can be used to power important research tools and projects. @Madprime's Genevieve Genome Report enables people to better investigate their genome. myvariant.info/blog/making-y…
Empowering people to make sense of their own genomic information is not as easy as it sounds. Fortunately projects like the Genevieve Genome Report is helping to bridge the gap. myvariant.info/blog/making-y…
Check it out -- some info about my project, "Genevieve Genome Report", on @OpenHumansOrg! (and I used @myvariantinfo to build it! 😄)
Making your data more accessible to YOU with Open Humans and the Genevieve Genome Report myvariant.info/blog/making-y…
4
2
In light of the recent @biothingsapi #python client release, we've updated our client: mygene.info/blog/mygene-pyth…
The @emblebi Comms team has made this key credit card reminder for DNA 🧬 handedness - you know you are in genomics Comms when you’ve got one of these
25
115
34
392
Curious about the databases @NCBI Gene and Portal @BioGPS? Tomorrow you have the opportunity to do that together with others in a KIB workshop. Read more and sign up: kib.ki.se/en/whatsup/events/… #bioinformatics
pitch no. 7 - #Wikidata integration
3
4
This resource lives on in @Wikipedia and @BioGPS and remains a great example of a forward-thinking pharmaceutical company open sourcing pre-competitive research. I asked the head of research for 1m $ on a Thursday and had it on a Monday — no strings. 7/n
1
2
12
The new Human Protein Atlas preprint! xitter.cf/biorxivpreprint/status…
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues biorxiv.org/cgi/content/shor… #bioRxiv
1
64
4
119
QT "The new study is a big step forward in cellular reprogramming. The transcription factors to make neurons are like codes" "Researchers are encouraging other scientists to use their results through a freely available platform called @BioGPS" xitter.cf/ScrippsSTSI/status/994…
A team of researchers from @scrippsresearch incl. STSI’s @atorkamani & @chunleiwu develop simplified ‘cookbook’ for engineering brain cells to study disease ow.ly/iPLR30jXam7
1
2
1
1
Replying to @BioGPS
Nice! @biogps also did a lovely set of blog posts about InterMine resources last year 😍 sulab.org/2016/06/biogps-spo… - including posts on RatMine, FlyMine, ZebrafishMine, and WormMine.
1
1