@JRaviLab

We develop data-driven approaches to study evolutionary & translational aspects of host:pathogen biology! PI @Janani137 @CUBiomedInfo | @jravilab@genomic.social

 Denver, Colorado
jravilab.github.io
Joined March 2020
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Another fantastic #ISMB2024 w/ two days of cool new methods & appl. @EvolComp, incl. 2 talks from our group: undergrad @EthanWolfe30 & postdoc @EvanBrenner11! Excited to share that Evan won 1st place in short talks at @iscb #ISMB2024 @EvolComp this year! xitter.cf/JRaviLab/status/178324…
Evan Brenner's talk slide: Predicting pathogen preferences and host adaptation by leveraging microbial genomics and machine learning

ALT Evan Brenner's talk slide: Predicting pathogen preferences and host adaptation by leveraging microbial genomics and machine learning

Ethan Wolfe's talk slide on Leveraging machine learning to predict antimicrobial resistance in ESKAPE pathogens

ALT Ethan Wolfe's talk slide on Leveraging machine learning to predict antimicrobial resistance in ESKAPE pathogens

JRaviLab@JRaviLab24 Apr 2024
And… 🥁 we’re excited to share another proud lab moment this week! @EvanBrenner11 won the first place 🥇💰 for postdoc talks at @RMBASM last weekend! Hearty congratulations on the very well-deserved win! #asm2024
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We will be at qCMB @ColoradoStateU @CSUVetMedBioSci this week (Jun 17-18)! Check out our talks - @EvanBrenner11 - @janani137 - @KewalinSamart and posters - @RLesiyon - @lucki12charms
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And… 🥁 we’re excited to share another proud lab moment this week! @EvanBrenner11 won the first place 🥇💰 for postdoc talks at @RMBASM last weekend! Hearty congratulations on the very well-deserved win! #asm2024
JRaviLab@JRaviLab20 Apr 2024
Looking forward to @RMBASM @ASMicrobiology! Check out - @EvanBrenner11 talk, 9a on Host specificity - Jake Krol, Charmie Vang @bsp_cu on AMR in ESKAPE pathogens - Karla Vela Lopez on Discovering new disease-gene assoc. in TB - Raymond Lesiyon on Bacterial traits (w @ninawaleEEB)
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Our fantastic undergrad @CUBiomedInfo, @EthanWolfe30, won 1st place at UURAF Cell Bio., Genet., & Genom. @UR_at_MSU, presenting his poster on predicting antimicrobial resistance in ESKAPE pathogens! 🎉An excellent achievement that recognizes Ethan's consistent brilliant effort!🙌🏼
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Looking forward to @RMBASM @ASMicrobiology! Check out - @EvanBrenner11 talk, 9a on Host specificity - Jake Krol, Charmie Vang @bsp_cu on AMR in ESKAPE pathogens - Karla Vela Lopez on Discovering new disease-gene assoc. in TB - Raymond Lesiyon on Bacterial traits (w @ninawaleEEB)
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🗓️Check out our work at #ISMB2022! Posters Jul 11/12: @KewalinSamart | @TransMedISMB w AmyTonielli @compbiologist Jul 13: @EthanWolfe30 | @EvolComp w @shames_lab @joe_burke11 Talk Jul 14: @Janani137 | @EvolComp w @Vigs_24 @joe_burke11 @elliotmajlessi iscb.junolive.co/ismb2022/Sc…
JRaviLab talk/posters at ISMB2022 July 11, 12 | Poster | Kewalin Samart Integrating multiple transcriptome-based methods to repurpose drugs for infectious diseases July 13 | Poster | Ethan Wolfe Characterizing effector-metaeffector pairs in Legionella pneumophila July 14 | 1.45p CDT | Talk | Janani Ravi Cross-database integration using evolution and machine learning to identify multiscale molecular building blocks for antibiotic resistance Contact: jravilab.github.io | @jravilab @janani137 | janani.ravi@cuanschutz.edu

ALT JRaviLab talk/posters at ISMB2022 July 11, 12 | Poster | Kewalin Samart Integrating multiple transcriptome-based methods to repurpose drugs for infectious diseases July 13 | Poster | Ethan Wolfe Characterizing effector-metaeffector pairs in Legionella pneumophila July 14 | 1.45p CDT | Talk | Janani Ravi Cross-database integration using evolution and machine learning to identify multiscale molecular building blocks for antibiotic resistance Contact: jravilab.github.io | @jravilab @janani137 | [email protected]

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We are hiring! PDI/@MSU_MMG, @msuvets/@MSUNatSci, @michiganstateu - PhD students @BmsMsu (GGS/MMG/BMB/CMB) - Postdocs - Scientific programmer #RStats #Python to work on building computational approaches to study infectious diseases. Pls RT! jravilab.github.io/joinus | @janani137
Logo of JRaviLab with female lead + 2 students in grey in front of a computer. Left: tree + data analysis icons indicating evolution/phylogeny, and data science. Top: hosts: human, animal, plant Bottom: pathogens: bacteria, viruses Right: hand with drugs, DNA indicating drug repurposing, and genomics/transcriptomics

ALT Logo of JRaviLab with female lead + 2 students in grey in front of a computer. Left: tree + data analysis icons indicating evolution/phylogeny, and data science. Top: hosts: human, animal, plant Bottom: pathogens: bacteria, viruses Right: hand with drugs, DNA indicating drug repurposing, and genomics/transcriptomics

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Looking forward to our first in-person meeting in 2y! #MMPC2021 @mmpc2020 Check out our posters: MolEvolvR: A webapp for characterizing proteins - Joe Burke (+@SamuelZChen @lauren_sosinski) Evolution of Staphylococcal AR Systems - @elliotmajlessi (+@Vigs_24 Joe @NealHammer1)
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*The* CompBio conf is here! #ismbeccb21 @ISMBinfo Check out our talks and posters! Talks - Jul25 @KewalinSamart @transmed on Reconciling connectivity scores - Jul27 @janani137 @EvolComp on MolEvolvR Posters #EvolCompGen - @elliotmajlessi - @Vigs_24 on AMR + comp. evol. methods!
:calendar:TALKS Jul 25 #TransMed Reconciling Multiple Connectivity Scores for Drug Repurposing Presenter: Kewalin Samart Co-Authors: Stephanie Hickey, Arjun Krishnan, Janani Ravi, Phoebe Tuyishime Jul 27 #EvolCompGen MolEvolvR: a webapp for characterizing proteins using molecular evolution and phylogeny Presenter: Janani Ravi Co-Authors: Samuel Chen, Lauren Sosinski, Joseph Burke, John Johnston

ALT :calendar:TALKS Jul 25 #TransMed Reconciling Multiple Connectivity Scores for Drug Repurposing Presenter: Kewalin Samart Co-Authors: Stephanie Hickey, Arjun Krishnan, Janani Ravi, Phoebe Tuyishime Jul 27 #EvolCompGen MolEvolvR: a webapp for characterizing proteins using molecular evolution and phylogeny Presenter: Janani Ravi Co-Authors: Samuel Chen, Lauren Sosinski, Joseph Burke, John Johnston

POSTERS #EvolCompGen Developing a machine learning approach to determine gene/protein features to classify bacterial groups Presenter: Vignesh Sridhar Co-Authors: Arjun Krishnan, Karn Jongnarangsin, Janani Ravi, Joseph T Burke Evolution of Staphylococcal Antibiotic Resistance Systems Across Gram-Positive Bacteria Presenter: Elliot Majlessi Co-Authors: Vignesh Sridhar, Janani Ravi, Neal Hammer #TransMed Reconciling Multiple Connectivity Scores for Drug Repurposing Presenter: Kewalin Samart Co-Authors: Stephanie Hickey, Arjun Krishnan, Janani Ravi, Phoebe Tuyishime

ALT POSTERS #EvolCompGen Developing a machine learning approach to determine gene/protein features to classify bacterial groups Presenter: Vignesh Sridhar Co-Authors: Arjun Krishnan, Karn Jongnarangsin, Janani Ravi, Joseph T Burke Evolution of Staphylococcal Antibiotic Resistance Systems Across Gram-Positive Bacteria Presenter: Elliot Majlessi Co-Authors: Vignesh Sridhar, Janani Ravi, Neal Hammer #TransMed Reconciling Multiple Connectivity Scores for Drug Repurposing Presenter: Kewalin Samart Co-Authors: Stephanie Hickey, Arjun Krishnan, Janani Ravi, Phoebe Tuyishime

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Excited to announce our first paper w/ @KewalinSamart @TuyishimePhoebe @compbiologist @janani137 — finally out in @BriefingBioinfo! A special shoutout once again to the awesome undergrad co-primary authors! 🎉 👀Check it out here: doi.org/10.1093/bib/bbab161 jravilab.github.io/connectiv…
JRaviLab@JRaviLab19 Oct 2020
1/ Our review on 'Reconciling Multiple Connectivity Scores for Drug Repurposing' led by our amazing undergrads @KewalinSamart @TuyishimePhoebe w/ @compbiologist is on @arxiv! GitHub: github.com/jravilab/connecti… Live doc: jravilab.github.io/connectiv… arXiv: arxiv.org/abs/2009.09317
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