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Joined July 2019
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📑 New @PCIgenomics recommendation, by @CamilleMrcht
genomics.peercommunityin.org…
On the work of Rusakovich et al. (2026) Benchmarking circRNA Detection Tools from Long-Read Sequencing Using Data-Driven and Flexible Simulation Framework
#OpenAccess #Bioinformatics
📑 New @PCIgenomics recommendation, by Fabienne Malagnac
genomics.peercommunityin.org…
On the work of Justine Colou et al. (2025) Genome of Trichoderma gamsii strain T035 a promising beneficial fungus in agriculture
#OpenAccess #Bioinformatics
"Using explainable machine learning for monitoring marine biodiversity" - the latest PCI Genomics recommendation from @RaphaelMourad doi.org/10.24072/pci.genomic…
Based on this preprint by Houria Braikia, Sana Ben Hamida, and Marta Rukoz: hal.science/hal-05046103v1
📑 New @PCIgenomics recommendation, by @Gecko1990
genomics.peercommunityin.org…
On the work of Pierre Brézellec (2025) The identification of the replicative helicase loader gene dciA within the Helicobacter pylori genome challenges current replication...
#OpenAccess #Bioinformatics
New PCI Genomics recommendation from @PatrickForterre: "Interactome study reveals extensive interaction of the SARS-CoV-2 virus spike protein with coiled-coil proteins mostly involved in cytoskeletal functions" - doi.org/10.24072/pci.genomic…
A recommendation of this preprint from Pierre Brézellec: doi.org/10.1101/2025.01.20.6…
All Recommenders are invited to the PCI Genomics Recommenders’ Meeting! We will present our goals and discuss possible ways to improve user experience and engagement. Two online meetings: Feb 9th, 18h CET OR Feb 11th, 15h CET. If not a Recommender yet, send us an email!
"Bulk RNA-seq to the rescue of differential expression analysis in single-cell transcriptomics" 🧫 📑 A new PCI Genomics recommendation by @miriplass: doi.org/10.24072/pci.genomic…
📝 A recommendation of this preprint from @GermainPl, Jiayi Wang, and @markrobinsonca
: doi.org/10.1101/2025.04.15.6…
Thank you to the recommender and two reviewers for evaluating this manuscript! 🙌
📑 New @PCIgenomics recommendation, by @HeleneChiapello
genomics.peercommunityin.org…
On the work of Noé Robert et al. (2025) Evidencing strain-dependency of metabolic pathways within 1,494 lactic bacteria genomes with the in silico screening Prolipipe pipeline
#OpenAccess
🌐 New PCI Genomics recommendation: GrAnnoT enhances annotation transfer via pangenome graphs, connecting linear and graph-based genomes. 🔬 “a valuable pangenome toolkit addition — fast, conservative, reproducible.” ➡️ genomics.peercommunityin.org… #Pangenome #OpenScience
🧬 New recommendation! HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids, by Simon Rio and colleagues.
✨ Recommended by Lucia Campos Dominguez who praised its scalability for complex polyploids
🔗 Recommendation: doi.org/10.24072/pci.genomic…
📄 Preprint: doi.org/10.1101/2025.03.14.6…
Big thank you to the recommender and two reviewers!
#Genomics #Polyploids #Bioinformatics #PlantGenomics
📑 New @PCIgenomics recommendation, by @sishuowang
genomics.peercommunityin.org…
On the work of David Robelin et al. (2025) localScore: an R package to highlight optimal and suboptimal segment in a sequence with associated p-values computation
#OpenAccess #Bioinformatics
New PCI Genomics recommendation! Of this preprint: "Sexual reproduction is controlled by successive transcriptomic waves in Podospora anserina"
Recommendation by Sébastien Bloyer: doi.org/10.24072/pci.genomic…
Preprint from Bidard and colleagues: doi.org/10.1101/2024.12.09.6…
PCI Genomics retweeted
NEW: Statement from the PCI RR Managing Board on the withdrawal of Infant and Child Development as a PCI RR-friendly journal, and the decision by Wiley to refuse preprints that have been peer-reviewed by @PeerCommunityIn / @PCI_RegReports
Read here➡️osf.io/tn8mh
ALT In 2024, Infant and Child Development (ICD) withdrew as a PCI RR-friendly journal and reneged on three Stage 1 recommendations issued by PCI RR. In addition, Wiley – the publisher of ICD – notified PCI RR and the PCI core team of its decision to withdraw all Wiley journals from PCI and PCI RR, including an additional 9 PCI-friendly journals. Finally, Wiley appears to have banned all of its ~1600 journals from considering submissions that have been previously reviewed by PCI or PCI RR. This statement explains the history of ICD joining PCI RR and developments that led to the current outcome. The PCI RR Managing Board believes that this shift in policy to become “PCI-hostile” renders Wiley journals incompatible not only with community-based preprint review but with preprint archiving in general.
We are looking for new recommenders to join Peer Community in Genomics! The position of “recommender” is analogous to an associate editor at a traditional journal. However, recommenders are not obliged to handle any manuscripts.
Peer Community In represents an innovative alternative to the publishing norms in most fields. As we are entirely grant-funded, our model is free for authors and readers: the focus is on the research.
If you are interested in applying to be a recommender but Genomics doesn't fit your expertise, then be sure to check out the other communities under the PCI umbrella: peercommunityin.org/current-…
cc' @PeerCommunityIn