@The_NiWi

Post-Doc at DTU in Denmark. Posts about #metabolicengineering #syntheticbiology #pseudomonas #R and #denmark

 Kopenhagen, Dänemark
sem-cfb.com
Joined November 2014
  • Tweets318
  • Following154
  • Followers312
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Teaser alert! Over the past few months, we developed #QurvE, a Swiss army knife for #microbial growth characterization including analysis of fluorescence data. An user-friendly R package and software with a graphical interface for every need! (1/8)
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This was a really fun one to work on! 👇
Pablo Iván Nikel @pabnik.bsky.social@PabloINik25 Sep 2023
#Pseudomonas putida' essential Tmk activity encoded in a genomic island... probably from a phage! Potential way for foreign #DNA to 'nest' into a new host, by knocking-out the native function—@The_NiWi @LabNikel @DTUBiosustain @mbiojournal @ASMicrobiology journals.asm.org/doi/10.1128…
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Felix Horns@FelixHorns11 Jul 2023
Want to sequence RNA from cells without killing them or deliver RNA programs from cell to cell? Today in Cell, we present RNA exporters, which package and secrete cellular RNA, for non-destructively monitoring cell dynamics by sequencing and delivering RNA authors.elsevier.com/sd/arti…
An engineered RNA export system enables non-destructive monitoring of cell dynamics and delivery of RNA from cell to cell.

ALT An engineered RNA export system enables non-destructive monitoring of cell dynamics and delivery of RNA from cell to cell.

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#QurvE version 1.1 is now available on #CRAN. Besides a few bug fixes, it now accepts data in tidy (long) format and allows inspection of code used within the #shiny app. #RStats #Bioinformatics #microbiology
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Exciting! #QurvE is in @NatureProtocols! Analyze bio growth data with ease. Explore it: rdcu.be/dfA5G. Huge thanks to @BioSteDonati, @JonathanFunk12, @PabloINik for their teamwork! #DataAnalysis #Biology
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The web app can be accessed at: qurveanalysis.com
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Thrilled to share my first publication in @NatureProtocols! We've developed QurvE, a free, user-friendly software for biological growth & fluorescence data analysis. #microbiology #SynBio 🔗 Publication: nature.com/articles/s41596-0… @The_NiWi @BioSteDonati @PabloINik @DTUBiosustain
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Check out QurvE our new FREE software for growth and fluorescence data analysis! QurvE is our attempt to enable robust, accurate and intuitive analysis of this type of data. Publication: rdcu.be/dfA5G Website: nicwir.github.io/QurvE
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Nikel SEM Group@LabNikel29 Jun 2023
Our #QurvE platform for visualizing and quantifying microbial growth is available and free to be used! Check below for more information!👇 Kudos to @The_NiWi Jonathan Funk @BioSteDonati and @PabloINik for creating and sharing this tool with the community!
Pablo Iván Nikel @pabnik.bsky.social@PabloINik29 Jun 2023
Discover our #QurvE #software designed to accurately calculate microbial growth rates & analyze fluorescence data! #Microbiology #SynBio🦠💻 @NatureProtocols led by @The_NiWi w/Jonathan Funk & @BioSteDonati @LabNikel @DTUBiosustain · Read it here👇🏻 rdcu.be/dfA5G
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Discover our #QurvE #software designed to accurately calculate microbial growth rates & analyze fluorescence data! #Microbiology #SynBio🦠💻 @NatureProtocols led by @The_NiWi w/Jonathan Funk & @BioSteDonati @LabNikel @DTUBiosustain · Read it here👇🏻 rdcu.be/dfA5G
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Riley Goodside
@goodside13 May 2023
Google Bard is a bit stubborn in its refusal to return clean JSON, but you can address this by threatening to take a human life:
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Nico Krink@NicoKrink5 Mar 2023
Super proud of @Anna__Miotto! Some last experiments and data analysis need to be done - but then we are ready for writing! 🇮🇹🇩🇪 I enjoyed working with her and @The_NiWi! #dreamteam #proudsupervisor – at Gladsaxe, Danmark
Nikel SEM Group@LabNikel5 Mar 2023
Not long ago @Anna__Miotto defended her special course at the @LabNikel! She did outstanding work under the supervision of @The_NiWi and @NicoKrink! We are looking forward to continuing and finishing project with her! Stay tuned for the #paper! @DTUBiosustain @DTUtweet
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Congratulations @PabloINik @NicoKrink! What an opportunity to much such an ambitious project forward. I can only see it succeeding with @NicoKrink, the master of #SynBio, spearheading the endeavor!
Joint Genome Institute@jgi9 Feb 2023
Replying to @jgi
Fluorine (F) requires harsh and energy-demanding chemical conditions. @PabloINik of @NovoNordiskFond will work toward a green biological solution for incorporating F into new bioproducts without the need for harsh petrochemicals. @LabNikel @DTUtweet @DTUBiosustain (7/10)
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LLMs like ChatGPT should be viewed as just another tool in the scientific toolbox. While they may have limitations, they can also greatly assist in scientific writing if used ethically. Let's focus on utilizing LLMs to their full potential rather than fearing them #AIinScience
Max Planck Society@maxplanckpress16 Jan 2023
The artificial-intelligence chatbot #ChatGPT can write fake abstracts that scientists have trouble distinguishing from those written by humans. Increasing sophistication of chatbots could undermine research integrity and accuracy, researchers fear. nature.com/articles/d41586-0… @Nature
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New CRAN package QurvE with initial version 1.0 #rstats
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Overjoyed & humbled to announce my promotion to Full #Professor & Chair of #Synthetic Bacterial #Metabolism @DTUtweet @DTUBiosustain—I owe this #achievement to the hard work of the amazing @LabNikel bunch, past & current mentors & our collaborators #ProudProfessor #Grateful🎓
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Georg Hochberg@KaHochberg3 Feb 2023
I'm increasingly scared of blast and NCBI. I have zero desire to use sequences that are not really public. But the current API makes it impossible to know for sure if you accidentally used sequences that are off limits. Especially if you work on microbial proteins. 1/n
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Once more, frustrated that a super-useful database published in 2009 in @NAR_Open is not available any longer. We have a problem with resources that are published with great fanfare in good journals and then abandoned short after ... ☹️
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Nikhil Naik
@nikhil_ai26 Jan 2023
Excited to have our paper on using large language models like ChatGPT for protein design come out in @NatureBiotech! You can tell a language model which type of protein to design, and it can generate one from scratch! nature.com/articles/s41587-0…
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Congratulations to our newly minted Dr. @JustineTurlin who nailed her #PhD defense today! Justine tamed #Pseudomonas for #synthetic C1 #assimilation & opened new avenues for #sustainable #bioproduction w/#SynBio · #ProudPI @LabNikel @DTUBiosustain @BiosustainPhd
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Will definitely add this to the visualization section of QurvE! 😍
Jan-Philipp Quast@QuastJP20 Jan 2023
Excited to announce the release of #ggplate on CRAN! ggplate is an R package that enables easy visualization of culture and microplate data. Find out how to use it here: jpquast.github.io/ggplate/ 1/5 #rstats #DataScience #datavisualization #Biology #microbiology #AcademicChatter
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