Genomics for pathogen surveillance, working on https://xitter.cf/t.co/VLZkBGf9T7 and Solu Platform (@solu_bio)
Joined October 2014
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Timo Saratto (Moilanen) retweeted
Nursing-home residents’ skin is a source of transmitted harmful and drug-resistant microbes nature.com/articles/d41586-0…
Timo Saratto (Moilanen) retweeted
New case study: Ultrafast outbreak detection with Solu & Nanopore sequencing 🚀
Scientists from from Awanui Labs Wellington and ESR developed a breakthrough outbreak detection model using Solu and Nanopore sequencing.
Link in reply!
Timo Saratto (Moilanen) retweeted
New in our latest beta release: Instantly look up what the literature says about any gene or mutation, right inside Solu!
Timo Saratto (Moilanen) retweeted
📌 The need for speed: ultra-rapid high-resolution outbreak analysis in a front-line hospital microbiology laboratory | @medrxivpreprint
See how hospital labs can analyse outbreaks fast - no on-site #Bioinformatics needed, cutting delays
doi: doi.org/10.1101/2025.02.04.2…
Timo Saratto (Moilanen) retweeted
NEW Publication🥳 Solu enables easy genome-scale pathogen surveillance!
Solu is a real-time #pathogen surveillance platform. It automatically assembles, characterizes & compares WGS data—no bioinformatics expertise is required.
🔗: tinyurl.com/y8p24uya
Timo Saratto (Moilanen) retweeted
👉Participate in ECMM Candida IV
🌎wide study on candidemia caused by non-albicans Candida spp.
Requirement: clinical data & isolate (not req for C.auris)
Reward: Reimbursement & Authorship
Observation period: 04/2024 - 09/2025
Interested? 📧 [email protected]
Timo Saratto (Moilanen) retweeted
We now automatically concatenate reads belonging to the same sample – simply upload your files and let the platform do the work.
Timo Saratto (Moilanen) retweeted
Our work on genetic determinants for S. aureus fitness in milk is now available online. The study also exemplifies how milk can modulate antibiotic susceptibility. Congrats @MaritaMarli and thanks to all collaborators (@DPorcellato @JWVeening @vincentdebakker @liuxuescience)!
Great collaboration with @Morten3891 to figure out which genes are required for Staphylococcus aureus to live in milk. Important to know due to Staphs ability to cause bovine mastitis and food poisoning biorxiv.org/content/10.1101/…
Timo Saratto (Moilanen) retweeted
Today the government announced a new partnership with Oxford Nanopore designed to enable genomics-based research and bring the benefits of innovative technologies to patients. We are proud to be part of it.
Find out more: ow.ly/XtoA50U0fQi
@nanopore
Timo Saratto (Moilanen) retweeted
#KLEBS2024: (free) online registrations are still open for the Klebsiella Epidemiology and Biology Symposium (KLEBS), November 20-22, 2024. Online registration is free to LMIC attendees, and 110/50 Euros for general/student otherwise. Visit klebs-2024.conferences-paste… and register!
Timo Saratto (Moilanen) retweeted
Save the date for AdvMicro25! 🥳🥳🥳The 1st International Conference on Advancements of Microbiology. The relevance of Microbes in Tackling threats to Health and Environment next year in Warsaw April 7-9th 2025. For more info go to advmicro2025.pl 😊😃 Please RT!
Timo Saratto (Moilanen) retweeted
In Sweden, we've been running a nationwide pilot project using @PacBio WGS for rare disease. Check out our results in this new paper! genome.cshlp.org/cgi/content…
Timo Saratto (Moilanen) retweeted
Agreed! That's why I wrote ggpubfigs, a ggplot2 extension that *only colorblind-friendly color palettes.
Easily make your figures colorblind-friendly with ggpubfigs! xitter.cf/NKWhiteman/status/1852…
Timo Saratto (Moilanen) retweeted
This is a great case study on @nanopore sequencing to investigate HAI (healthcare-associated infection) transmission by scientists at MD Anderson Cancer Center
🦠 Single lab tech, weekly runs
🦠 High-accuracy, Q scores >50-60
🦠 Avg turnaround ~24 hrs
nanoporetech.com/blog/tracki…
Timo Saratto (Moilanen) retweeted
The newest #FungAMR & #ChroQueTas version for Candida albicans antifungal resistance mutations is now live in both Solu Platform and candida.app!
Timo Saratto (Moilanen) retweeted
Excited to share BakRep - our latest work published in @MicrobioSoc #MGen
>661,000 bacterial genomes, uniformly characterized & annotated, enriched with metadata, accessible via a flexible search engine
doi.org/10.1099/mgen.0.00130…
👇 1/7
Timo Saratto (Moilanen) retweeted
SAVE THE DATE!!
7th-9th September 2025 for the @BritSocMedMyc 59th annual conference at @NorwichCC @Assembly_House
@MFIG_Bertuzzi @NormanRhijn @AlyssaHudson83 @SBidula
Timo Saratto (Moilanen) retweeted
Reminder that the abstract deadline for @MicrobioSoc Annual conference 2025 is on 12th November. I am organising a session on Understudied Bacterial Pathogens and would love to see your submissions to the session 🧫🦠
#microbio25
Timo Saratto (Moilanen) retweeted
DIAMOND v2.1.10 provides some bug fixes. ARM64 binaries for macOS and Linux are now available on bioconda. github.com/bbuchfink/diamond
Timo Saratto (Moilanen) retweeted
I've made a new framework for developing sequence based typing (SBT) tools.
🐪camlhmp ("camel hump") allows for an SBT schema to be defined in YAML, disentangling the SBT logic from the code, making much easier to maintain.
See poster or learn more at: rpetit3.github.io/camlhmp/la…
