@bebatut

She/her. Researcher & Instructor in Bioinformatics. @openlifesci, @gxytraining. Mother. @bebatut@piaille.fr

 Auvergne, France
bebatut.fr/
Joined June 2011
  • Tweets1.3K
  • Following718
  • Followers1.2K
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12 years of GalaxyP = 57 manuscripts + 50 workshops + 13 GTN Tutorials + 75 posters + more than 100 talks. galaxyp.org z.umn.edu/galaxypreferences training.galaxyproject.org/t… #Proteogenomics #Metaproteomics #Multiomics
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I’m proud to share that I received the best poster award at the ELIXIR 2024 All Hands Meeting ! 😃 doi.org/10.7490/f1000r… Thank you for a great event, let’s meet again at the 2024 ELIXIR Biohackathon in Barcelona in November 📅 #ELIXIR24 @IFB_Bioinfo
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Bérénice Batut retweeted
ELIXIR Europe@ELIXIREurope3 Apr 2024
📣Two new Communities have been formed in ELIXIR: 🔵 The #RDMCommunity - implementing #FAIR and #openscience principles. 🔵 The #MicrobiomeCommunity - enhancing research through standards for sequence analysis and multi-omics integration. Read more ⬇️ loom.ly/q4Rv4WY
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Zamin Iqbal@ZaminIqbal11 Mar 2024
First step in a community project to provide a uniformly assembled, annotated and searchable set of bacterial genomes, our preprint on our initial release of 1.9 million genome assemblies+taxonomic estimates. (figure compares with previous 661k dataset) biorxiv.org/content/10.1101/…
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Michael Schatz@mike_schatz14 Jan 2024
Now up Saskia Hiltemann presenting the Galaxy Training Network that provides tutorials, lectures, and training resources across hundreds of topics! @galaxyproject #PAG31 read more here: journals.plos.org/ploscompbi…
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EMBL-EBI Training@EBItraining10 Nov 2023
Congratulations to team member Marta Lloret Llinares and all co-authors on your paper that's been published by @PLOSONE. Read 'An international consensus on effective, inclusive, and career-spanning short-format training in the life sciences and beyond': journals.plos.org/plosone/ar…
An image from the published article called 'The bicycle principles'. A wheel metaphor is given to the core principles and community principles in training.

ALT An image from the published article called 'The bicycle principles'. A wheel metaphor is given to the core principles and community principles in training.

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BioNT@biont_training21 Sep 2023
⏰ Reminder: Join us for the second #BioNT workshop and unlock the power of Python! 🧬✨🚀👉shorturl.at/qDPW2 🗓️ Date: Nov 21, 2023 - Nov 24, 2023 ⏰ Workshop Time: 18:00 to 21:00 (CET) ⏳ Deadline: Oct 2, 2023 #LearningOpportunity #BioinfoWorkshop #DigitalLifeSciences
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Happy to share our latest work on integrating meta-omics data 📊 Excellent work by @val100420 to make this happen in #usegalaxy. Visit doi.org/10.1186/s40793-023-0…
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GigaScience@GigaScience25 Jul 2023
Second #BOSC2023 keynote from Joseph Yracheta talking about @NativeBio and the dissonance between scientific altruism (#opendata) and capitalist extraction #ISMBECCB2023
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BioNT@biont_training20 Jul 2023
⏰ Update: Exciting News! We extended the deadline for the first BioNT workshop to accommodate more participants. Don't miss this fantastic opportunity to unlock the power of RNA-seq analysis with @gxytraining! 🧬✨🚀👉shorturl.at/ewKUV ⏳ New Deadline: August 08, 2023
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MSha@MalvikaSharan14 Jul 2023
We have officially closed the call for OLS-8! This time we have truly turned the table with time with most applications from our Global South colleagues. 👏💪 Kudos to the changemakers in @openlifesci community! You all are beautiful & I am privileged to work with you all. ❤️
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28 jours, ce n'est pas assez ! Il y a deux ans, le congé paternité était étendu, passant de 14 à 28 jours. Une avancée par rapport à ce qui prévalait auparavant, mais insuffisante. Aux côtés des syndicats et de 100 personnalités, nous relançons le débat. liberation.fr/idees-et-debat…

Pour que les congés parentaux deviennent enfin égalitaires

La réforme de 2021 a étendu le congé paternité de 14 à 28 jours. Il n’existe pas un parent principal, la mère, et un parent secondaire. C’est pourquoi il faut allonger la part obligatoire et non...

liberation.fr
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Bérénice Batut retweeted
Michael Schatz@mike_schatz6 Jul 2023
Super excited to announce our new VGP-ERGA-Galaxy pipeline for scalable, accessible, and reproducible reference genome assembly. In just a few clicks anyone anywhere can assemble their genome to VGP quality! @genomeark @galaxy @erga_biodiv biorxiv.org/content/10.1101/…

Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy

Improvements in genome sequencing and assembly are enabling high-quality reference genomes for all species. However, the assembly process is still laborious, computationally and technically demandi...

biorxiv.org
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Replying to @openlifesci
@openlifesci has opened applications for Open Seeds OLS-8 cohort training and mentoring in open science and research. Until the 7th of July! Join us next week at the Application Clinic call (Q&A) eventbrite.co.uk/e/applicati…

Application Clinic Call (Q&A)

Thinking of applying to Open Seeds OLS-8? Having questions? Come join us and ask us questions in a safe space ! :)

eventbrite.co.uk
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Björn Grüning@bjoerngruening8 Jun 2023
If you are interested in Microbiom research and #usegalaxy check out galaxyproject.org/projects/m…
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Calling all #microbiologists! Help the microGalaxy community improve microbial data analysis by sharing how you do (or don't) #usegalaxy for your research. Share your thoughts in this short survey: forms.gle/q8LizeoHCxjjQp559
microGalaxy logo

ALT microGalaxy logo

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Bérénice Batut retweeted
ELIXIR UK@ElixirNodeUk12 Apr 2023
🎉 We're very excited to announce that @openlifesci (OLS) are the newest members of ELIXIR-UK! OLS provides a fantastic #mentoring and #training programme for #OpenScience ambassadors! You can read more here👇: elixiruknode.org/news/2023/o…
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openlifescience@openlifesci11 Apr 2023
One small step for Nasa’s @ToOpenScience, one huge step for open research. We’re delighted to announce we’re collaborating with @metadocencia to deliver virtual open science training cohorts in English & Español, over the next 3 years! Blog soon! Keep your eyes peeled. +info:
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PAPER ALERT: an interesting Education @gxytraining article in @galaxyproject #training - "Galaxy Training: A powerful framework for teaching!" in @PLOSCompBiol from @FrederikCoppens @Yvan2935 @bebatut @EoscLife #bioinformatics #OpenSciences. @ELIXIRnodeBE journals.plos.org/ploscompbi…
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Three years ago we lost James @jxtx This is a slide from GCC2019, which he made by messing with JS console. It is hard to imagine a better title slide for Galaxy update…
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