🌿 🧬 ⚽ 🏔️ Computational Genomics in IBM Research. Friluftsliv elsewhere! J in JB.
New York, USA
Joined April 2022
- Tweets21
- Following97
- Followers12
- Likes72
Checkout our new preprint on COMICAL (Contrastive Multi-Omics Association Learning) which learns genotype-phenotype relationship by extending the CLIP framework!
medrxiv.org/content/10.1101/…
#genomics #AI #foundationmodels #transformers #clip #Neuroscience
Aritra Bose retweeted
Great day @ #ISMB2024 for the first ever tutorial on #QuantumComputing #QML on multi #omics with @boseomics @LaxmiParida16 @HakanDoa
Aritra Bose retweeted
🌟Excited to share insights at the #Recomb-CCB! Join @boseomics talk today @ 5:30pm on #TDA in cancer research. Discover how TDA methods unveil hidden patterns in high-dimensional #genomics data. Let’s decode the complexity of cancer together!🧬🔍 #Bioinformatics #CancerGenomics
Aritra Bose retweeted
CuNA: Cumulant-based Network Analysis of genotype-phenotype associations in Parkinson's Disease medrxiv.org/cgi/content/shor… #medRxiv
Aritra Bose retweeted
The list of #RECOMB2024 Accepted Papers is now live: recomb.org/recomb2024/accept….
A huge congrats to all the authors! @RECOMBconf
Aritra Bose retweeted
🚨📢Excited to say that @boseomics @LaxmiParida16 @HakanDoa will give a tutorial at @iscb #ISMB2024 on "Quantum-enabled multi-omics analysis". If you are interested on apply #quantum #MachineLearning techniques to analyze #omics data! check out : ibm.biz/ismbTutorialQML
Aritra Bose retweeted
📢Happy to see our work ( @boseomics @LaxmiParida16 et al) on understanding #GWAS and polygenic risk scores (#PRS) in the light of feature selection using #machinelearning in #Alzheimers disease is finally out in @iScience_CP!
#genomics #research sciencedirect.com/science/ar…
Very excited to be a part of this amazing collaboration between @boehringerus and @IBMResearch on #antibody discovery using foundation models!
newsroom.ibm.com/2023-11-28-…
#ArtificialInteligence
Aritra Bose retweeted
if you are interest new #DataAnalysis approach, read our paper "Probing #omics data via harmonic persistent homology" with @LaxmiParida16 @SaugataBasu4 where harmonic #persistenthomology is used in multiple cases in #CancerResearch.
#TDA #Genomics
arxiv.org/abs/2311.06357
Our recent preprint on fast, approximate (and provably accurate) computation of linear mixed models for #GWAS is out! We propose that for biobank-scale data, one can get GWAS results in hours using matrix sketching on the GRM and log likelihood computations. #Genomics
MaSk-LMM: A Matrix Sketching Framework for Linear Mixed Models in Association Studies medrxiv.org/cgi/content/shor… #medRxiv
Our work, #CluStrat on population stratification in GWAS with structure-informed GRM computed by low rank Mahalanobis distance is finally out in @BMCBioinfo! It achieves better stratification than state of the art. #Genomics #statistics #popgen #gwas
rdcu.be/dqwJz
View my verified achievement from @IBM. credly.com/badges/98e3feaf-7…
Aritra Bose retweeted
Looking forward to: Computational Biology meets Data Science | Banff International Research Station (birs.ca)
Excited to share our recent work about how genetics can tease out racial bias in large scale biobanks!
Role of genetics in capturing racial disparities in cardiovascular disease medrxiv.org/content/10.1101/…
#Genetics #race #bias #Epidemiology
Great to see our collaborative effort from @IBMResearch on a generalizable #PRS that transfers across ancestries in large biobanks getting accepted to #PSB23!
All you need is any precomputed PRS and FairPRS will give an unbiased and ancestry-corrected PRS! #PrecisionMedicine
Very happy to announce our IRM for PRS manuscript got accepted to #PSB23 🕺🧬
Personally, I'm very excited for the chance to combine #causality (or at-least causality-inspired ML) with #genomics.
And even more thankful the team was as excited.
medrxiv.org/content/10.1101/…
Our new preprint from @IBMResearch on FairPRS, a domain-adaptation based algorithm to predict generalizable PRS which can be transferred across populations is now available in @medrxivpreprint! #genetics #prs
FairPRS: a fairness framework for Polygenic Risk Scores medrxiv.org/cgi/content/shor… #medRxiv
Aritra Bose retweeted
Guidance from @CircAHA on the use of polygenic risk scores in the management of cardiovascular diseases. ahajournals.org/doi/10.1161/…
Excited to present our latest work from @IBMResearch on #race vs #Genetics in clinical decision-making at the Equity-focussed research track at #ISMB2022! We show how genetics can mitigate systemic bias in race-correction algorithms in #healthcare!
#healthequity #socialjustice – at Wisconsin, USA
Aritra Bose retweeted
Images are the most abundant source of data we have about everything. Tanya throwing together in lots of modalities from satellite topography all the way to body sensors and citizen science data #ISMB2022
