A database of orthologous groups and functional annotation
EMBL, Heidelberg
Joined August 2014
- Tweets46
- Following26
- Followers350
- Likes11
EggNOG database retweeted
eggNOG-mapper v2 now in bioarxiv: doi.org/10.1101/2021.06.03.4… Awesome work by @cpcantalapiedra et al refactoring code for better performance on huge metagenomic datasets and adding new features: ORF calling, fast domain prediction, orthology reports & more! @BorkLab
@anahernandezpl1
EggNOG database retweeted
Want to learn how to work with phylogenetic trees programmatically? From automating pipelines to advance custom visualization, we will try to cover most useful features of @etetoolkit in this virtual @eccb2020 tutorial. @fransua_serra
We got a full day tutorial accepted on ETE Toolkit at @eccb2020, which has been transformed in a virtual 3h tutorial. We will try to touch all major features with a bunch real examples. Only intermediate python level required. Registration should be open
eccb2020.info/ntbt06-reconst…
EggNOG database retweeted
"To make more of these tools accessible via scalable metaproteomics workflows, eggNOG-mapper and Unipept 4.0 were incorporated into the #usegalaxy platform."
Survey of metaproteomics software tools for functional microbiome analysis. biorxiv.org/cgi/content/shor… #bioRxiv
The online version of eggNOG-mapper for genome & #metagenome #functional annotation based on #orthology calls from @eggnogdb v5 is now available for testing at eggnog-mapper.embl.de Now w/ more computing power thx to @denbiOffice . @BorkLab @jhcepas @DDDeCaF CPCantalapiedra
EggNOG database retweeted
Then you can annotate the genes. Basic BLAST will work in the sense that it will give you some results.
However, we found that filtering the results using orthology gives better results. This can be done with eggnog-mapper (from @jhcepas)
academic.oup.com/mbe/article…
EggNOG database retweeted
Second session of #denbicloudum: Liren, @lukas_jelonek, @jhcepas and @sneumannoffice present #Spark, @nextflowio, @eggnogdb mapper and @PhnmlH2020
EggNOG database retweeted
Interested in building tools based on @eggnogdb and @etetoolkit for analysis and visualization of single cell RNAseq data collected from diverse marine animals? check this offer at @EMBL (Arendt's lab) in collaboration with our group at @CBGP_Madrid. embl.de/jobs/searchjobs/inde…
nice use of @eggnogdb and eggnog-mapper for functional annotation and orthology prediction in single-cell transcriptomics of non-model species. xitter.cf/notSoJunkDNA/status/99…
Evolution of pallium, hippocampus, and cortical cell types revealed by single-cell transcriptomics in reptiles
science.sciencemag.org/conte…
EggNOG database retweeted
Two more job offers: Research Technician to work in tools such as @etetoolkit or @eggnogdb (deadline very close), and Postdoc in metagenomics/phylogenomics. Also last weeks for applying to the the PhD INPhiNIT program! Stay tuned at: compgenomics.org/jobs/ xitter.cf/jhcepas/status/9391536…
I'll be starting a Computational Genomics group at @CBGP_Madrid mid next year.If interested in #Phylogenomics and Comparative
#Metagenomics,a PhD offer w/ v/ good conditions is now available at the international #InPhINIT program: obrasociallacaixa.org/el/inv… Other positions open soon
eggNOG-mapper tool now officially available in #BioConda for fast genome wide functional annotation. bioconda.github.io/recipes/e… @DDDeCaF
KEGG KOs and BiGG reactions now part of eggNOG-mapper annotations. eggnog-mapper.embl.de
EggNOG database retweeted
eggNOG-mapper just hit 1000 unique users and more than 7000 functional annotation jobs! @DDDeCaF @eggnogdb @embl eggnog-mapper.embl.de
EggNOG database retweeted
Using @etetoolkit for phylogenomic analysis in large datasets, including @eggnogdb, @phylomedb & metagenomics under @DDDeCaF project #SMBE17
EggNOG database retweeted
brief intro to #reproducible phylogenetic reconstruction, analysis & #visualization using ETE tomorrow 9:15 at #SMBE17 @etetoolkit
EggNOG database retweeted
Quick functional annotation of a whole proteome using the eggNOG mapper. Super useful. eggnogdb.embl.de/#/app/emapp… #qfo5 2/n.
EggNOG database retweeted
biorxiv.org/content/early/20…
Host-parasites interactions using @eggnogdb
EggNOG database retweeted
Saw the @eggnogdb eggNOG-mapper paper is in press, one of the most useful tools for functional annotation I know of: bit.ly/2rZnHha
EggNOG database retweeted
MBE latest: Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper dlvr.it/P1Lp83
