@etetoolkit

ETE is a python programming toolkit that assists in the automated manipulation, analysis and visualization of phylogenetic trees.

 EMBL, Heidelberg
etetoolkit.org
Joined June 2011
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  • Following32
  • Followers639
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Checking this upcoming ETE course
Jaime Huerta-Cepas@jhcepas17 Mar 2025
Places are filling up fast! If you are interested in phylogenomic data analysis and tree visualisation with our new ETE4 software version, don't forget to register for our upcoming (free) course in Madrid. 👇 Travel grants still available (also overseas) bsky.app/profile/jhcepas.bsk…
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The ETE toolkit retweeted
Jaime Huerta-Cepas@jhcepas25 Sep 2023
Replying to @jhcepas @deng_ziqi @etetoolkit
One of the coolest features of #TreeProfiler IMO, is its ability to automatically compute consensus/summary information for internal nodes, which integrates seamlessly with the new interactive zooming and auto-colapsing features of the #ete4 tree visualization engine. @deng_ziqi
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Jaime Huerta-Cepas@jhcepas25 Sep 2023
Another step in our goal to build a phylogenomics framework that works well with large datasets: TreeProfiler, a handy tool by @deng_ziqi that can map/profile any kind of data against huge trees. Tree + TSV file = auto viz with @etetoolkit v4.0 biorxiv.org/content/10.1101/…
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Course announcement - Phylogenomic data analysis and visualization using ETE Toolkit. Where: Madrid, Spain. When: Nov 13-17th, 2023 Registration (free): bit.ly/ete_workshop Topics: programmatic reconstruction, analysis, handling and visualization of phylogenetic trees.
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We are starting our third #ETE4 hackathon day. Yesterday was very productive, with ppl making progress in the visualization of large gene phylogenies with taxonomic info, biogeographic data, HyPhy bindings, phylogenetic profiling, tree handling, and much more.
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Today we started our first hackathon! 5 days , 14 people coding together at @CBGP_Madrid + a few other online. Our main goal is to boost the release of the new ete4 version, which will include a new visualization system able to explore huge trees! #ETE4 funded by @cziscience
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A call to our community: New discussion forum, and upcoming Hackathon supported by @cziscience If interested in participating (in any way), please get in touch so we can better plan the logistics. github.com/etetoolkit/ete/di…

ETE phone home - a call to our community · etetoolkit ete · Discussion #553

The development of ETE started more than 15 years ago as part of a thesis project. It was always maintained without direct funding. Only recently, thanks to a grant from the CZI EOSS program, we ma...

github.com
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The ETE toolkit retweeted
Jaime Huerta-Cepas@jhcepas31 Mar 2021
Replying to @jhcepas @etetoolkit @NCBI @cziscience @CBGP_Madrid
smooth zooming, auto-scaling branch lengths, minimap navigation, topology manipulation, rect & circ views, permalinks to scene region, search.. Next major steps:merging with @etetoolkit 's viz grammar for programmatic use & seq.alg support. @jordiburcas @cziscience @CBGP_Madrid
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The ETE toolkit retweeted
Jaime Huerta-Cepas@jhcepas31 Mar 2021
Interactive huge tree visualization in @etetoolkit getting closer. Check out our current online demo: treeview.etetoolkit.org Navigating @ace_gtdb bact tree and complete @NCBI Taxonomy is now possible! Awesome work by @jordiburcas w/ the support of @cziscience @CBGP_Madrid
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Exciting tutorial "Reconstruction, analysis, and visualization of #phylogenomic data with the @ETEtoolkit" to be held in the New Trends in Bioinformatics by ECCB. Register to the #ECCB2020 and have the opportunity to join this tutorial! 👇
The ETE toolkit@etetoolkit24 Jun 2020
We got a full day tutorial accepted on ETE Toolkit at @eccb2020, which has been transformed in a virtual 3h tutorial. We will try to touch all major features with a bunch real examples. Only intermediate python level required. Registration should be open eccb2020.info/ntbt06-reconst…
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We got a full day tutorial accepted on ETE Toolkit at @eccb2020, which has been transformed in a virtual 3h tutorial. We will try to touch all major features with a bunch real examples. Only intermediate python level required. Registration should be open eccb2020.info/ntbt06-reconst…
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The ETE toolkit retweeted
Bui Quang Minh@bq_minh5 Jun 2020
really excited to see this... well deserved! We have been using @etetoolkit for rendering trees from IQ-TREE web server
CBGP@CBGP_Madrid27 May 2020
#NewsCBGP | CBGP team awarded Chan Zuckerberg grant to support scientific software for phylogenomic analysis 🇪🇸 - cbgp.upm.es/index.php/es/?op… 🇬🇧 - cbgp.upm.es/index.php/en/?op… #somosUPM
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The ETE toolkit retweeted
CBGP@CBGP_Madrid27 May 2020
#NewsCBGP | CBGP team awarded Chan Zuckerberg grant to support scientific software for phylogenomic analysis 🇪🇸 - cbgp.upm.es/index.php/es/?op… 🇬🇧 - cbgp.upm.es/index.php/en/?op… #somosUPM
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The ETE toolkit retweeted
Jaime Huerta-Cepas@jhcepas27 May 2020
After more than a decade developing & maintaining ETE, getting the recognition of essential software in science by @cziscience is making everyone in the @etetoolkit team a bit happier :) @fransua_serra @deng_ziqi @renato_alvs @anahernandezpl1 @CBGP_Madrid @La_UPM @INIA_es & more
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The ETE toolkit retweeted
Jaime Huerta-Cepas@jhcepas27 May 2020
I am very glad to announce that we have been awarded with a grant from @cziscience to support the development of @etetoolkit. This will boost the release of a new version focused on better tree comparison methods and large tree visualization. @CBGP_Madrid 1/2
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The ETE toolkit retweeted
Jaime Huerta-Cepas@jhcepas22 Jul 2019
thanks for this summary thread @yoyehudi !
yo yehudi stays away from humans! 🏳️‍🌈@yoyehudi22 Jul 2019
The bigger the data get, the harder it is to visualise - often we end up with a spaghetti hairball. @jhcepas is sharing @etetoolkit with #biovis, to show programattic visualisations of huuuge tree data in python 🐍 👍🏽🌳 #ISMBECCB2019 #ismbeccb
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The ETE toolkit retweeted
Jaime Huerta-Cepas@jhcepas22 Jul 2019
another summary, thanks @biovis_net !
BioVis@biovis_net22 Jul 2019
Next up is our first long talk of the afternoon by Jamie Huerta-Cepas (@jhcepas) on Combining programmatic visualization and interactive exploration of large phylogenetic trees using ETE toolkit (@etetoolkit) #biovis #ISMBECCB
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The ETE toolkit retweeted
Jaime Huerta-Cepas@jhcepas19 Jul 2019
Getting ready for my #ISMB2019 presentation (Mon 3pm @BioVis). First time talking about my hobby project for years: how to make programmatic viz of HUGE annotated trees possible. Still far from production, but it feels good to explore a 10M nodes tree in real time w/ 7G & 1CPU!!!
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nice use of ETE3 methods for orthology prediction, auto rooting and phylogenomics analysis of newly sequenced wheat gene families: science.sciencemag.org/conte…
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Jaime Huerta-Cepas@jhcepas17 Aug 2018
Interested in building tools based on @eggnogdb and @etetoolkit for analysis and visualization of single cell RNAseq data collected from diverse marine animals? check this offer at @EMBL (Arendt's lab) in collaboration with our group at @CBGP_Madrid. embl.de/jobs/searchjobs/inde…
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