@fobinf
 Denmark
Joined April 2010
  • Tweets63
  • Following81
  • Followers63
3Media
Frederik O. Bagger retweeted
Bo Porse@Bo_Porse22 May 2024
@Rigshospitalet @UCPH_BRIC We are located in sunny and pleasant Copenhagen
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Please RT Just two more days to apply for permanent bioinformatics position - use code to save lives in beautiful Copenhagen! Great collaborative team, diverse tasks, and meaningful outcomes rigshospitalet.dk/job-og-udd…
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Frederik O. Bagger retweeted
Bo Porse@Bo_Porse12 Jan 2023
Delighted to finally see this out in @LeukemiaJnl. Thanks to great efforts by @MTrempenau @bruhn_mikkel @Mafalda_AP @pundhir_sachin and not least many collaborators. @Rigshospitalet @UCPH_BRIC @UCPH_health nature.com/articles/s41375-0… 1/n
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One week left to apply! 👇
Frederik O. Bagger@fobinf16 Jun 2022
We are increasing our bioinformatics team with two permanent positions! Come and work in an incredible team of developers and bioinformaticians at Genomic Medicine in charming Copenhagen. Coding saves lives in personalised medicine! rigshospitalet.dk/job-og-udd… pls. RT
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We are increasing our bioinformatics team with two permanent positions! Come and work in an incredible team of developers and bioinformaticians at Genomic Medicine in charming Copenhagen. Coding saves lives in personalised medicine! rigshospitalet.dk/job-og-udd… pls. RT
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Frederik O. Bagger retweeted
Rasmus Lykke Marvig@rasmusmarvig16 Feb 2022
Top performance by Genomic Medicine dep @Rigshospitalet in @precisionfda challenge: precision.fda.gov/challenges… 🥇in Somatic Variant Calling 🥈 in TMB Estimation Bioinformatic pipeline based on @gatk_dev

precisionFDA

A secure, collaborative, cloud-based high-performance computing environment advancing regulatory science and AI innovation for the FDA.

precision.fda.gov
Rigshospitalet@Rigshospitalet16 Feb 2022
Bedst i verden til at finde kræftmutationer: Amerikanske FDA uddeler guldmedalje til Afdeling for Genomisk Medicin. bit.ly/3gVI9YN #personligmedicin #sundpol @cancer_dk
Leder af sektion for bioinformatik Frederik Otzen Bagger.

ALT Leder af sektion for bioinformatik Frederik Otzen Bagger.

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We have two open permanent positions in my clinical team for bioinformaticians either with or without clinical experience. Great people, meaningful work and exciting challenges! Copenhagen is lovely. Deadline Tuesday rigshospitalet.dk/job-og-udd… rigshospitalet.dk/job-og-udd…
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And finally out! Fizzah's thesis work, with @fobinf @teichlab @EI_single_cell @Kate_Sci
JTH@JTHjournal23 Feb 2021
New article: Megakaryocytes release #platelets Choudry et al @sangerinstitute @uni_copenhagen @Cambridge_Haem find distinct transcriptional states in different ploidy MK. MK from myocardial infarction pts 🫀 ➡️ specific gene🧬 signature. bit.ly/2ZD3RbH #openaccess
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I may add that working with @TobiasStannius should be reason enough to join us !
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Frederik O. Bagger retweeted
Stephen Turner@strnr2 Feb 2021
Fast gene set enrichment analysis #Rstats Preprint: biorxiv.org/content/10.1101/… Bioconductor: bioconductor.org/packages/re… Source: github.com/ctlab/fgsea/
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Frederik O. Bagger retweeted
Peter Menzel@ptr_menzel28 Jan 2021
geom_sina() ftw
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Frederik O. Bagger retweeted
Kedar Natarajan@kedar_natarajan16 Nov 2020
Hey single-cell folks. We are excited to share our work "TENET, single-cell gene regulatory reconstruction framework for single-cell transcriptomics" with @kjwonl lab, now out in @NAR_Open academic.oup.com/nar/advance… We hope its useful to the community! 1/5 Brief summary below
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Frederik O. Bagger retweeted
Kedar Natarajan@kedar_natarajan23 Sep 2020
Excited to share this work, now online at @LSAjournal Brief twitter summary: xitter.cf/kedar_natarajan/status… Happy reading !
LifeScienceAlliance@LSAjournal23 Sep 2020
Single-cell large-scale integrative gene regulatory networks from different mouse cell atlases reveals regulatory crosstalk important for single-cell identity @kedar_natarajan @DanishIAS @NATsdu @GenomicsUnit life-science-alliance.org/co…
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Great work by @ProbstVictoria. Thoroughly testing and assessing so you don’t have to.
Victoria Probst@ProbstVictoria31 Jul 2020
Are you looking to start a #singlecell experiment? Have a read: #Benchmarking full-length transcript single cell mRNA sequencing protocols biorxiv.org/content/10.1101/…

Benchmarking full-length transcript single cell mRNA sequencing protocols

Single cell mRNA sequencing technologies have transformed our understanding of cellular heterogeneity and identity. For sensitive discovery or clinical marker estimation where high transcript capture...

biorxiv.org
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#COVID19 Vaccine Candidates: Prediction and Validation of 174 #SARSCoV2 Epitopes. disq.us/t/3n3tk5u Intense effort to validate predicted epitopes. TL;DR: Prediction tools show high rate of false positives in #SARSCoV2 for tested allotypes. Data & candidates freely available
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Great analysis effort by Marek Prachar, and record breaking speed from @IntavisAG (peptides) and @immunitrack (binding stability measurements), who offered their work freely in the battle against #COVID19
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Paper is here: #COVID19 Vaccine Candidates: Prediction and Validation of 174 #SARSCoV2 Epitopes. disq.us/t/3n3tk5u. Data freely available
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Frederik O. Bagger retweeted
Ole Winther@OleWinther124 Mar 2020
174 predicted and validated epitopes COVID-19 vaccine candidates bioRxiv viewer disq.us/t/3n3tk5u @fobinf @immunitrack
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Frederik O. Bagger retweeted
Inês Barroso@InesBarroso423 Feb 2020
How about creating new science prizes that reward teams not individuals? There is much talk about science being a team effort but prizes focus on an individual. How do teams get rewarded?! #Reimagineresearch
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Frederik O. Bagger retweeted
Albin Sandelin@albin_san31 Jan 2020
Another postdoc position (computational) in my lab focused on micro-environmental vs genetic drivers of cancer - please share! Genetics expertise needed. jobportal.ku.dk/videnskabeli…
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