asst prof @YaleMed | systems biology, tissue homeostasis, machine learning | @hattaca.bsky.social

New Haven, CT
Joined March 2009
Hattie Chung retweeted
BREAKING NEWS The 2026 #NobelPrize in Physiology or Medicine has been awarded to Karl Deisseroth, Peter Hegemann and Georg Nagel “for their discoveries concerning light-gated ion channels and optogenetics.”
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Hattie Chung retweeted
AI folks who are new to bio should spend some time with wet lab folks not only to understand how experiments, assays, lab work is done but also to learn the basic concept of CONTROLS. 1/
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Thrilled to share our latest work, out in @SciImmunology! We show that tissues match their #macrophage numbers to #mitochondrial_activity , ensuring efficient #waste_clearance and #tissue_fitness . A tour de force by Laura Pena-Couso, in collab with @andrsHidalgo16 & Pura Muñoz🧵
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We seek to fill a tenure-track faculty position at the Assistant or Associate Professor Level (PhD or MD/DVM/PhD) to build an interdisciplinary research program here at @YaleAge, part of @YalePathology & @YaleMed. #pathologyjobs Learn more & apply here: apply.interfolio.com/186720
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And finally—a bit of personal news: 🔬 I’m on the faculty job market this year! I’m looking for tenure-track opportunities where I can build a lab at the intersection of developmental biology, mechanobiology, reproductive biology & aging.
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This is actually a great slide for how to get fooled by trying to target immunity/inflammation. Classic bio textbook, one mechanism cleanly leads to another. Which is not at all what happens, each of these trigger dozens of other genes too. So when you systemically drug a cytokine, all kinds of consequences. Not saying Novo is naive to this. They know, but lack better ways to engage inflammation.
Replying to @satvik_93
Helpful slide from Novo at TCT last year:
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Hattie Chung retweeted
here's a few opportunities straight quoted from the study - "ovary as a systemic regulator of female health and aging"
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Congrats to our Biological Engineering alum Hattie Chung @hattaca on beautiful work on a most fascinating topic - the aging ovary.
It gave me a lot of pleasure to read @hattaca and team's paper. So I will do my best to share my (unsolicited) commentary… Have you ever wondered what actually happens inside the ovary as it ages? Not my field, but that biology is super intriguing. Not just fewer eggs, everyone knows that, but what breaks down at the tissue level, between cells, across time? Lan et al. (Nature Aging) mapped the mouse ovary across age using spatial transcriptomics, what genes were active, where, in which cells, in what order. Over 600k spots across 22 ovaries, hundreds of follicles tracked across the estrous cycle. It turns out that aging does not just deplete follicles, but also breaks the timing. In young ovaries, the right cells do the right things at the right moment. In old ovaries, still cycling, this falls apart. Even atresia, the controlled death of follicles that don't make it, becomes dysregulated, debris accumulating rather than clearing. The immune connection is super cool too!. Aging shifts the immune landscape in ways that drive inflammation rather than tissue maintenance, and this starts before cycles even stop. Not my field (because all of them are) but tissue aging is fundamentally about losing coordination, not just losing cells. And you need spatial tools to see it. nature.com/articles/s43587-0…
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It gave me a lot of pleasure to read @hattaca and team's paper. So I will do my best to share my (unsolicited) commentary… Have you ever wondered what actually happens inside the ovary as it ages? Not my field, but that biology is super intriguing. Not just fewer eggs, everyone knows that, but what breaks down at the tissue level, between cells, across time? Lan et al. (Nature Aging) mapped the mouse ovary across age using spatial transcriptomics, what genes were active, where, in which cells, in what order. Over 600k spots across 22 ovaries, hundreds of follicles tracked across the estrous cycle. It turns out that aging does not just deplete follicles, but also breaks the timing. In young ovaries, the right cells do the right things at the right moment. In old ovaries, still cycling, this falls apart. Even atresia, the controlled death of follicles that don't make it, becomes dysregulated, debris accumulating rather than clearing. The immune connection is super cool too!. Aging shifts the immune landscape in ways that drive inflammation rather than tissue maintenance, and this starts before cycles even stop. Not my field (because all of them are) but tissue aging is fundamentally about losing coordination, not just losing cells. And you need spatial tools to see it. nature.com/articles/s43587-0…
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Hattie Chung retweeted
Today in @Nature, we report MouseMapper: foundation-model AI to map disease perturbations across the entire mouse body cell-by-cell. In obesity, it revealed body-wide inflammation & unexpected facial nerve damage. 🧵👇🔉 nature.com/articles/s41586-0… led by @Dorie00 & @yingchen733
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Hattie Chung retweeted
Great to have Javid Moslehi @CardioOncology at @YaleCardiology Grand Rounds. A great discussion on a translational research journey. From bedside to bench and back. ICI myocarditis as a great example. @ericjvelazquez @KatAAClark @hattaca
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We are opening applications for our 2026 cohort of FutureHouse AI-for-Science Independent Postdoctoral Fellows! Apply our AI tools to specific problems in biology and biochemistry, in collaboration with world-leading academic labs: --$125,000 annual stipend. --Access to all tools developed by FutureHouse and Edison Scientific at scale, including Kosmos and several as-of-yet unreleased agents, with under-the-hood access to them to specialize them for your workflows. --Receive dedicated software engineering support. --1 year with possible 1 year extension. Even more exceptional co-advisors than last year. Deadline for applications is February 13th, 2026. Link in next post.
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Very excited to present our work in NOLA exploring epigenomics in thoracic aortic aneurysms! Please consider passing by our moderated poster on Saturday @samf_7927 @hattaca @RolandAssiMD #DustinLieu #GeorgeTellides #ChungLab #AHA25 @YaleVBTProgram @YaleIMed @yalectsurgery
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Hattie Chung retweeted
When and how do different tissue physical structures deteriorate during aging (structural aging)? What molecular changes occur in tissues during periods of major changes? Are there tissue-specific periods of accelerated structural aging? Which organs age early vs. late? Is there cross-organ coordination in structural aging? And, finally, how lifestyle, diseases and genetics impact these organ-specific trajectories? While important, these questions haven’t been answered yet because we lack structural and molecular data from normal aging tissues at scale. We present a framework taking the first stab at scale at these questions using high resolution histology images and omics (+more) from 25,000 post-mortem tissues (public data: GTex). We reason that structure determines function and learning how tissue structure changes with age can help us understand the process of aging in different tissues - a central question with yet little understanding. An example is to visualize these two ovaries histology: young vs. old ovary- young ovaries cortex is intact, with follicles, no fibrosis - basis of its function (partially). First, we extract tissue structure from these organs using their high-res histology images using a pre-trained digpath foundation model (UNI) and asked how much they change with age (Structural Aging Rate)? As an example, the ovary has two peaks around the late 30s and then around 55. First aligns with accelerated follicle loss and second is just after post-menopause. This shows that change in morphology of the ovary captures its functional milestones during aging with no training. Bonus Puzzle: Does anyone know how these two functional milestones of ovary were originally found in the last century? What if we repeat the same analysis on bulk-omics, transcriptomics and methylation, from the same samples? Can they capture this bimodal functional decline? No. (read the paper of our explanation) Can molecular clocks trained on chronological age track this? No. They assume aging is linear. Note: Unlike molecular clocks trained on chronological age, PathStAR learns with no age labels. We simply ask: When and how does tissue morphology change most rapidly during life?
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🚨 New preprints from our lab! First, we introduce Cryo-mtscATAC-seq, led by Maren (@ms-maren.bsky.social), enabling high-throughput clonal tracing from frozen human samples by isolating nuclei with their mitochondria (“CryoCells”). 👉 biorxiv.org/content/10.1101/…
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Save the Date: The 2nd Yale Center for Research on Aging (Y-Age) Symposium is set for Monday, October 13 at the Anlyan Center at @YaleMed. Join us for a day-long discussion on human longevity, geroscience, and the biology of #aging. @YalePathology. bit.ly/470j7D9
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Hattie Chung retweeted
What do you do when grants are cancelled, faculty searches are frozen, and the ability to do the science you believe in is slipping out of reach? I wrote an essay. On efforts to solve aging with reprogramming, the primacy of the epigenome, and the path to rewriting our future:
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