PhDing my way through glycans, synthetic biology, & machine learning @goteborgsuni Occasionally to be found on a mountain top somewhere.
Gothenburg
Joined October 2015
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Jon Lundstrøm retweeted
Daniel Bojar and co-researchers report the discovery and characterization of Cucumis melo agglutinin (CMA1), a new R-type #lectin from melon 🍈🍉.
🔗 beilstein-journals.org/bjoc/…
#carbohydrate #GlycanArray #PlantLectin #BJOC 💎🔓 @daniel_bojar @jonlundstrm
Jon Lundstrøm retweeted
Meet CandyCrunch, our AI-glycomics model featured in @naturemethods! Trained on 500k spectra for rapid glycomics analysis on all glycan types.
@ElisaTelisa, @CallumMIves, @karlsson_niclas, @_jurban
More data=better models, so keep on uploading! #glycotime
nature.com/articles/s41592-0…
Jon Lundstrøm retweeted
Compositional data analysis for comparative glycomics! Learn why you can't live without it:-)#glycotime
glycowork v1.3 tackles glycan abundance interdependence +uncertain absolute amounts via CLR/ALR transformations&scale models, yielding reliable findings
biorxiv.org/content/10.1101/…
Jon Lundstrøm retweeted
🎉 glycowork v1.2! #glycotime
- A (very) basic GUI for Windows in early alpha (on the Release page). 🖥️
- New analysis functions for alpha diversity & biosynthesis. 🔍
- Smoother experience with automated outlier handling & more efficient graph ops. ✨
github.com/BojarLab/glycowor…
Our mini-review outlining recent trends in milk oligosaccharide research is now live at Carbohydrate Research - have a look! 🥛
#glycotime #MOs
sciencedirect.com/science/ar…
The full CMA1 story is now also online at @BeilsteinInst Journal of Organic Chemistry! #glycotime #lectin
beilstein-journals.org/bjoc/…
With our latest preprint, we're diving into the complex world of plant glycan-binding proteins - identifying and characterizing a novel R-type lectin from melon, Cucumis melo agglutinin / CMA1. #glycotime
biorxiv.org/content/10.1101/…
Jon Lundstrøm retweeted
In this month’s #GlyGenWebinarSeries, Daniel Bojar presented powerful tools and strategies for discovering critical elements hiding in glycomics data: wiki.glygen.org/GlyGen_Webin…. Visit his ‘glycowork’ hub for more details: github.com/BojarLab/glycowor…
I had a blast presenting our recent #glycotime work at the 26th Nordic Glycobiology Meeting hosted by @cphglyco last Friday! 🥛🧑🔬 ...
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Jon Lundstrøm retweeted
We're hiring! Join us for your PhD; the goal is for you to be hybrid, so we ❤️ either computational or experimental background
Glycobiology, systems biology, AI, bioinformatics --> have it all 👩💻🧑🔬
#glycotime
web103.reachmee.com/ext/I005…
Jon Lundstrøm retweeted
After 2.5 years of development, glycowork releases its version 1.0 🥳🎊
🌟it, use it, add to it.
Countless small improvements in this update, but I want to talk about two *big* changes: universal input & native, narrow wildcards 🥁
#glycotime
github.com/BojarLab/glycowor…
Jon Lundstrøm retweeted
Excited to share our newest preprint! CMA1 as one of the first deeply characterized melon lectins with a neat binding specificity: C2-substituted galactose (GalNAc / Fuca1-2Gal), including in GAGs (CSA / CSC) #glycotime
biorxiv.org/content/10.1101/…
With our latest preprint, we're diving into the complex world of plant glycan-binding proteins - identifying and characterizing a novel R-type lectin from melon, Cucumis melo agglutinin / CMA1. #glycotime
biorxiv.org/content/10.1101/…
Supporting our findings on a molecular level, we also solve the high-resolution structure of the CMA1 N-terminal domain in complex with sugar ligands using X-ray crystallography.
I'm grateful for the support from COST action STSMs @InnoglyA @NanoProbes and all the collaborative efforts making this work possible!
Proud to have our recent work on milk oligosaccharides featured on the cover of Molecular & Cellular Proteomics! @molcellprot #glycotime #MO
mcponline.org/article/S1535-…
Our latest work on differential expression analysis of glycomics data is now live at @CellRepMethods!
cell.com/cell-reports-method…
With glycowork v0.8 we're introducing functionality for differential expression analysis of glycan structures & motifs - have a look and let us know what you think! #glycotime
Jon Lundstrøm retweeted
MCP News in @ASBMB Today | In honor of #NationalBreastfeedingMonth, @Locke_Marissa reported on how @daniel_bojar (@goteborgsuni) is studying the sugars found in land and sea mammals to develop better human infant formula: asbmb.org/asbmb-today/scienc….
Jon Lundstrøm retweeted
Great coverage of our research on milk oligosaccharides by @locke_marissa from @asbmb! #glycotime
asbmb.org/asbmb-today/scienc…
