Multicellular modeling environment from TU Dresden. 👩🔬↔💻 News and support. Tweets by @wdeback
Dresden, Germany
Joined February 2018
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It is out! The new 🎉 Morpheus v2 🎉 is now available for Windows, Mac OSX and Linux. An overview of all the goodies in this new blog post: morpheus.gitlab.io/blog/2018… Please upgrade and spread the word.
morpheus retweeted
Check out the @EBItraining virtual course on "Mathematics of life" with spatial modelling and reproducible modelling. Including a Morpheus tutorial by @morpheus_lab/@zih_tud!
Have you just started in systems biology and want to learn more about the modelling approaches, tools and resources used? Join this hands-on training course which will guide you through these.
📅Apply by 02 July -
ebi.ac.uk/training/events/ma…
#Bioinformatics #Training
Check out the @EBItraining virtual course on 'Mathematics of life' with spatial modelling and reproducible modelling. Including a Morpheus tutorial!
Join us #virtually this September.
The full programme for 'Mathematics of life' can now be found on our website. It features talks, tutorials and plenty of opportunity for group projects. #EBImaths
💻 bit.ly/EBImaths
⏰ Applications close 14 Aug 2020
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New research from Beck and colleagues: "Stochastic simulations and parameter estimation for multiple-hitting T cells" - read it here: plos.io/2DVH2YV
morpheus retweeted
3/4 We @JanHasenauer lab @ICBMunich developed the #HPC ready tool #pyABC (github.com/icb-dcm/pyabc), with e.g. self-tuned distances and proposal kernels. Together with @morpheus_lab we develop the @FitMultiCell platform tailored to multi-cellular systems. #YoungScientistsHMGU
morpheus retweeted
Growing Neural Cellular Automata -- A new Distill article by @zzznah, @RandazzoEttore, @eyvindn and @drmichaellevin
distill.pub/2020/growing-ca/
Jörm Starruß will present our work on ABC param fitting of Morpheus simulations @icsb2019 today in Tunnel Gallery 14:10-15:30: „Integrative worflow of modelling and parameter estimation for quantitative multicellular systems biology“.
More info here: fitmulticell.readthedocs.io
Not in Okiwana? See our renewed Morpheus tutorials for self-paced learning
morpheus.gitlab.io/courses/
To all modellers in Okinawa @icsb2019: We're providing a Morpheus workshop at the satellite event organized by @COMBINE_coord and @denbiOffice. #ICSB2019 morpheus.gitlab.io/event/201…
morpheus retweeted
This week I will be teaching part of a Biophysics course @Fysikk_UniOslo focusing on the modeling and simulation of multicellular and multiscale systems using @morpheus_lab
morpheus retweeted
The 2nd #fitmulticell meeting in Heidelberg already showed great progress on the path to data-driven modeling of multi-cellular systems. Check out how we integrate #pyabc and @morpheus_lab at gitlab.com/fitmulticell!
morpheus retweeted
Happy to announce that pyABC version 0.9.15 is now available. The new release of this @HPC-ready @ParameterEstimation tool provides additional interfaces to external simulators, enhanced visualisation capabilities and a more detailed documentation.
github.com/ICB-DCM/pyABC/rel…
morpheus retweeted
I recommend you @morpheus_lab those type of simulations can be run with very little effort. You can start here: morpheus.gitlab.io/blog/2018…
Day 2 of our meeting on standardization of multicellular models: a two-track hackaton 🤓 discussing and implementing (1) tools to translate models between simulators 👨💻 and (2) creating a multicell language specification.
Check aims and program here 👇
multicellml.org/wiki/doku.ph…
The current version of multicell-conv only supports a part of modeling features. But by diving in and try translating, it highlights many of the practical difficulties.
And it turns out to be a great discussion starter. 🔥
Importantly, we have all the people in one room to solve these issues today!
- @Compucell3D: James Glazier and @AndySomogyi
- @Chaste_Project: @JochenKursawe
- @morpheus_lab: Jörn Starruß, Lutz Brusch and @wdeback