#ML and #genomics @ArsenalBio. Previously @illumina, @10xGenomics, @Stanford CS. I mostly tweet about science. she/her.
California, USA
Joined September 2013
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The CompBio & ML group at @ArsenalBio is hiring! jobs.arsenalbio.com/jobs/dis…
Join us for a virtual event on the #epigenetics of #autism and neurodevelopment with @yihuizhu12 and @karineier: meetup.com/bay-area-chromati…
The Computational Biology and ML group at @ArsenalBio is hiring! If you're excited about using your engineering and data analysis skills to meaningfully advance cell therapies against cancer, then come join us! jobs.arsenalbio.com/jobs/dis…
Sofia Panagiotopoulou retweeted
Check out a new method for single cell ATAC-seq analysis developed by @HY3952 and I based on the Basset model for predicting accessibility from DNA using deep conv nets biorxiv.org/content/10.1101/…
Sofia Panagiotopoulou retweeted
How vaccination successfully took on the B.1.1.7 variant
cell.com/cell-reports-medici… @CellPressNews
Sofia Panagiotopoulou retweeted
Our paper out in @NatureGenet uses CRISPR essentiality screen data to map gene function! Another beautiful collab w/ Mike Bassik, led by the outstanding @michaelwainberg, @RoarkeKamber, @_bakshay with invaluable contribs from coauthors. 1/
🔥HOT OFF THE PRESS @NatureGenet by @anshulkundaje Michael C. Bassik and colleagues:
🧬A genome-wide atlas of co-essential modules assigns function to uncharacterized genes | go.nature.com/3mXaD6P
I've binge-listened to "Invisible women" over the last couple weekends. I was aware of a lot of the biases, but some of the research was new to me. The accumulated evidence will make you angry - at least I think it should amazon.com/Invisible-Women-D…
Great read! "Visible neural network" by the @TreyIdeker group helps identify mechanisms of action of drugs and suggest synergistic drug combinations: cell.com/cancer-cell/fulltex… #drugdiscovery
Looking forward to the ML in Epigenomics meetup of the Bay Area Chromatin and Epigenomics community on Tue Nov 17th. Featuring @anshulkundaje! meetup.com/Bay-Area-Chromati…
It's like those COVID-tracking maps. Except seeing the numbers go up makes you feel good: electproject.github.io/Early…
Sofia Panagiotopoulou retweeted
Interested in the genetic basis of rare disease?
Postdoc opening with @mehurles to link genetic + EHR data in large patient cohorts to identify novel causes of disease.
jobs.sanger.ac.uk/vacancy/po…
Partnership with Genomics England + HDR UK
Sofia Panagiotopoulou retweeted
Very happy and proud to present: The GTEx papers. This set of 15 papers published today describes the final phase of this 10-year effort, providing the genomics community an atlas of genetic regulatory variants and a deep dive into the biology behind it. sciencemag.org/collections/g…
Sofia Panagiotopoulou retweeted
We’re excited to share our new paper in Nature Communications (tinyurl.com/yxojlzcz), describing our platform that enables multiplexed transcriptional profiling of chemical and genetic perturbations in large pools of co-treated cancer cell lines, with single-cell resolution.
Really cool: Simultaneous assessment of TF-binding and expression in single-cells. I really like the potential to use self-reporting transposons to record TF binding history through a lineage!
I'm so excited to share that our paper on single cell calling cards is finally in print @CellCellPress! Link to the post-peer reviewed publication: cell.com/cell/fulltext/S0092…. A huge congratulations to all the co-authors!
What's changed since the preprint? 👇1/🧵
Sofia Panagiotopoulou retweeted
TODAY! Watch documentary Coded Bias screening at @ptownfilm. For tickets & more information, visit: provincetownfilm.org/festiva…
#CodedBias #Ptownfilm #Provincetownfilmfest #PIFF2020
Very cool paper on pooled knock-ins with single-cell RNA readout. Also very clearly written! sciencedirect.com/science/ar…
MIT-Harvard suit against ICE: "ICE’s action proceeded without any indication of having considered the health of
students, faculty, university staff, or communities"
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Sofia Panagiotopoulou retweeted
Efficient gene editing of human long-term hematopoietic stem cells validated by clonal tracking go.nature.com/3eILDvj
Nice method for doublet detection in single-cell experiments that builds on top of scVI.
Check out the final version of our manuscript describing Solo for doublet detection in single cell RNA-seq in Cell Systems cell.com/cell-systems/fullte…