WDL (pronounced widdle) is a workflow definition language designed from the ground up as a human-readable and -writable way to express tasks and workflows.
Massachusetts, USA
Joined July 2016
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We're hosting a WDL hackathon focused on testing next week Feb 18-19 at the Broad Institute. Join us! Full details at support.terra.bio/hc/en-us/a… and registration form at forms.gle/HuDVrd3smUaM49LV9
WDL Dev Team retweeted
Very cool to see Cromwell on Azure 1.0.0 released on GitHub! github.com/microsoft/Cromwel…
WDL Dev Team retweeted
Earlier this month, we released Cromwell on Azure, an open-source project on GitHub from Microsoft Genomics that provides scientific workflow management for genetic analysis. lnkd.in/eGdRHGz #MSFTAdvocate
Featuring WDL and Cromwell on @Azure thanks to @Microsoft @Health_IT -- see also our blog at software.broadinstitute.org/…. Come chat about it at the @BroadGenomics booth 714 if you're at #ASHG19 this week!
GA4GH Mention: Powering genomics tools and analysis with cloud computing in microsoft.com fal.cn/34vt4
WDL Dev Team retweeted
Nice overview of bioinformatics workflows definition and execution including discussion of @commonwl @galaxyproject and @WDL_dev
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WDL Dev Team retweeted
Explore a WDL workflow on Dockstore by choosing between classic and EPAM visualizations.
dockstore.org/workflows/gith…
ALT Classic view
ALT EPAM View
So looking forward to having v1.0 support in @TerraBioApp ! It will unlock some really neat features with important effects like increased portability.
Here are my highlights of the presentation of @TerraBioApp this week explaining current and future developments in the platform: (a) @WDL_dev v1.0 support underway and (b) Terminal/CLI support ongoing in 2019Q4 and 2020
This blog post shows how to run WDL workflows on cloud on @TerraBioApp
This blog post walks you through the basic steps involved in running the preset pipelines; you'll see it's pretty straightforward. software.broadinstitute.org/…
WDL Dev Team retweeted
Did you know our 1.6.0 release back in April lets you launch WDL workflows via @TerraBioApp now? Browse our workflows at dockstore.org/search?descrip… and try it out!
WDL Dev Team retweeted
Would anyone in the Boston/Cambridge area be interested in an informal meetup about GATK? Chat about current tools, go over a few practical examples of how things work, comment on development roadmap (next features coming down the pipe) etc? If so, when/where?
62%During working hours
12%After hours office space
25%After hours social space
8 votes • Final results WDL Dev Team retweeted
Win a trip to @OBF_BOSC this summer in Basel! – at Cambridge, MA
Do you have a pet workflow or a favorite notebook? Have you thought about sharing them with the world, but keep pushing it off? Here is your opportunity to do just that! To learn how, check out terra.bio/tosc
WDL Dev Team retweeted
We had a hackathon yesterday to make the AWS support in Cromwell. A lot of great progress was made, the next release should be exciting for the AWS users :)
WDL Dev Team retweeted
It appears Cromwell has reached "bar graffiti" status. Onwards and upwards, Jamie!
WDL Dev Team retweeted
GitHub sandbox project for creating and running
@WDL_dev pipelines in Cromwell: github.com/ecerami/wdl_sandb…. Runs locally and via @googlecloud Genomics API. Actually got to do some real coding over the past few weeks...!
WDL Dev Team retweeted
If you maintain @WDL_dev workflows, "miniwdl check" can speed up your code/test/debug loop by detecting mistakes and oversights through static code analysis. Covers task shell scripts as well as WDL wiring. Early days; give it a try and file issues: github.com/chanzuckerberg/mi…
WDL Dev Team retweeted
On my way home after a fabulous @gatk_dev workshop in Copenhagen. Looking forward to get started implementing #GATK4 in our clinical workflow back home. Also really impressed by #WDL, #Cromwell, and #FireCloud. Will definitely try running “FiveDollarGenome” on my own genome data.
WDL Dev Team retweeted
CY: Took 2 years, but today would only take 6 months due to availability of CWL, WDL, Cromwell, Kubernetes, Dockstore, and other technologies. #ASHG18